- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x SO4: SULFATE ION(Non-functional Binders)
- 3 x CL: CHLORIDE ION(Non-functional Binders)
- 5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.3: 7 residues within 4Å:- Chain A: R.84, I.85, A.101, G.102, V.103
- Chain C: R.84, P.87
5 PLIP interactions:2 interactions with chain C, 3 interactions with chain A- Hydrogen bonds: C:R.84, C:R.84, A:R.84, A:T.99, A:T.99
EDO.4: 3 residues within 4Å:- Chain A: K.94, N.95, R.122
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:K.94, A:R.122
EDO.9: 9 residues within 4Å:- Chain B: P.87, R.88, L.91, A.92, I.97, T.99, L.116, V.132, A.133
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:R.88
EDO.10: 9 residues within 4Å:- Chain A: R.84, P.87
- Chain B: R.84, I.85, A.86, T.99, A.101, G.102, V.103
5 PLIP interactions:3 interactions with chain B, 2 interactions with chain A- Hydrogen bonds: B:R.84, B:I.85, B:T.99, A:R.84, A:R.84
EDO.11: 3 residues within 4Å:- Chain B: N.95, R.122, D.123
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:N.95, B:R.122
- 3 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
PEG.5: 8 residues within 4Å:- Chain A: A.101, G.102, Y.108, E.111, V.112, K.113, V.115
- Chain C: S.89
6 PLIP interactions:5 interactions with chain A, 1 interactions with chain C- Hydrogen bonds: A:G.102, A:V.103, A:Y.108, A:E.111, A:K.113, C:S.89
PEG.6: 8 residues within 4Å:- Chain A: K.27, V.28, K.30, T.76, V.77, P.78, V.79, R.106
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:K.27, A:V.28, A:K.30, A:T.76, A:V.79, A:R.106
PEG.12: 8 residues within 4Å:- Chain A: S.89, V.93
- Chain B: M.68, I.85, A.101, G.102, K.113, V.115
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:G.102
- Water bridges: B:K.113
- 1 x NA: SODIUM ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Tchigvintsev, A. et al., Structure and activity of the Saccharomyces cerevisiae dUTP pyrophosphatase DUT1, an essential housekeeping enzyme. Biochem.J. (2011)
- Release Date
- 2009-06-16
- Peptides
- Deoxyuridine 5'-triphosphate nucleotidohydrolase: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
JB
KC
L
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x SO4: SULFATE ION(Non-functional Binders)
- 3 x CL: CHLORIDE ION(Non-functional Binders)
- 5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 3 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)
- 1 x NA: SODIUM ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Tchigvintsev, A. et al., Structure and activity of the Saccharomyces cerevisiae dUTP pyrophosphatase DUT1, an essential housekeeping enzyme. Biochem.J. (2011)
- Release Date
- 2009-06-16
- Peptides
- Deoxyuridine 5'-triphosphate nucleotidohydrolase: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
JB
KC
L