SMTL ID : 3kod.2 (2 other biounits)

DTD from Plasmodium falciparum in complex with D-Serine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

homo-dimer

Ligands

3 x DSN: D-SERINE(Non-covalent)

DSN.1: 4 residues within 4Å: Chain A: W.72, P.150, V.151 Chain B: Y.140 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.7 DSN.2: 3 residues within 4Å: Chain B: F.89, P.109, G.138 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:G.138 DSN.3: 2 residues within 4Å: Chain A: N.66 Chain B: R.16 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:R.16

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bhatt, T.K. et al., Ligand-bound Structures Provide Atomic Snapshots for the Catalytic Mechanism of D-Amino Acid Deacylase. J.Biol.Chem. (2010)

Release Date

2009-12-08

Peptides

D-tyrosyl-tRNA(Tyr) deacylase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

D-tyrosyl-tRNA(Tyr) deacylase

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