SMTL ID : 5j61.3 (3 other biounits)

D-aminoacyl-tRNA deacylase (DTD) from Plasmodium falciparum in complex with glycyl-3'-aminoadenosine at 2.10 Angstrom resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

2 x A3G: 3'-deoxy-3'-(glycylamino)adenosine(Non-covalent)

A3G.1: 11 residues within 4Å: Chain A: L.41, G.42, I.43, S.87, Q.88, F.89, K.107, A.112, F.137, G.138 Chain B: P.150 9 PLIP interactions: 8 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:I.43, A:S.87, A:Q.88, A:F.89, A:T.90, A:K.107, A:K.107, A:G.138, B:P.150 A3G.2: 14 residues within 4Å: Chain A: P.150, V.151 Chain B: L.41, I.43, S.87, Q.88, F.89, T.90, A.106, K.107, P.109, A.112, F.137, G.138 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:I.43, B:I.43, B:S.87, B:Q.88, B:F.89, B:T.90, B:K.107, B:G.138

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Routh, S.B. et al., Elongation Factor Tu Prevents Misediting of Gly-tRNA(Gly) Caused by the Design Behind the Chiral Proofreading Site of D-Aminoacyl-tRNA Deacylase. Plos Biol. (2016)

Release Date

2016-09-21

Peptides

D-tyrosyl-tRNA(Tyr) deacylase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
F

D-tyrosyl-tRNA(Tyr) deacylase

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