SMTL ID : 3lmu.2 (3 other biounits)

Crystal structure of DTD from Plasmodium falciparum

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.30 Å

Oligo State

homo-dimer

Ligands

10 x IOD: IODIDE ION(Non-functional Binders)

IOD.1: 5 residues within 4Å: Chain A: V.86, S.87, Y.116, G.135, F.137 Ligand excluded by PLIP IOD.2: 3 residues within 4Å: Chain A: R.2, F.92, L.105 Ligand excluded by PLIP IOD.3: 1 residues within 4Å: Chain A: N.99 Ligand excluded by PLIP IOD.4: 2 residues within 4Å: Chain A: W.49, F.115 Ligand excluded by PLIP IOD.5: 4 residues within 4Å: Chain B: S.87, Y.116, G.135, F.137 Ligand excluded by PLIP IOD.6: 3 residues within 4Å: Chain A: Q.6, N.147 Chain B: N.147 Ligand excluded by PLIP IOD.7: 2 residues within 4Å: Chain A: K.58 Chain B: N.99 Ligand excluded by PLIP IOD.8: 3 residues within 4Å: Chain B: I.43, S.87, F.89 Ligand excluded by PLIP IOD.9: 2 residues within 4Å: Chain B: P.109, F.137 Ligand excluded by PLIP IOD.10: 4 residues within 4Å: Chain B: R.2, F.92, G.93, L.105 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yogavel, M. et al., Structure of D-tyrosyl-tRNATyr deacylase using home-source Cu Kalpha and moderate-quality iodide-SAD data: structural polymorphism and HEPES-bound enzyme states. Acta Crystallogr.,Sect.D (2010)

Release Date

2010-03-02

Peptides

D-tyrosyl-tRNA(Tyr) deacylase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

D-tyrosyl-tRNA(Tyr) deacylase

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