SMTL ID : 3lmv.2 (2 other biounits)

D-Tyr-tRNA(Tyr) Deacylase from plasmodium falciparum in complex with hepes

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.83 Å

Oligo State

homo-dimer

Ligands

2 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)

EPE.1: 11 residues within 4Å: Chain A: S.87, Q.88, F.89, F.137, G.138, N.139, Y.140 Chain B: R.7, N.66, G.149, P.150 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:F.89, A:G.138, B:R.7, B:R.7 EPE.2: 10 residues within 4Å: Chain A: R.7, N.66, G.149, P.150 Chain B: S.87, Q.88, F.89, G.138, N.139, Y.140 7 PLIP interactions: 4 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:R.7, A:R.7, A:N.66, A:N.66, B:S.87, B:F.89, B:G.138

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yogavel, M. et al., Structure of D-tyrosyl-tRNATyr deacylase using home-source Cu Kalpha and moderate-quality iodide-SAD data: structural polymorphism and HEPES-bound enzyme states. Acta Crystallogr.,Sect.D (2010)

Release Date

2010-03-02

Peptides

D-tyrosyl-tRNA(Tyr) deacylase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

D-tyrosyl-tRNA(Tyr) deacylase

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