SMTL ID : 3mb4.2 (1 other biounit)

Crystal Structure of the fifth Bromodomain of Human Poly-bromodomain containing protein 1 (PB1) with NMP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.66 Å

Oligo State

monomer

Ligands

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 4 residues within 4Å: Chain A: I.41, L.102, I.103, D.106 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.106 EDO.2: 2 residues within 4Å: Chain A: R.44 Ligands: CL.7 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.44 EDO.3: 1 residues within 4Å: Chain A: H.70 No protein-ligand interaction detected (PLIP)

1 x MB3: 1-methylpyrrolidin-2-one(Non-covalent)

MB3.4: 6 residues within 4Å: Chain A: I.41, L.51, Y.54, Y.96, N.97, I.103 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.51, A:Y.54, A:Y.96 Hydrogen bonds: A:N.97

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 2 residues within 4Å: Chain A: D.32, K.33 Ligand excluded by PLIP CL.6: 3 residues within 4Å: Chain A: K.112, V.113, E.116 Ligand excluded by PLIP CL.7: 4 residues within 4Å: Chain A: Y.24, L.43, E.65 Ligands: EDO.2 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Filippakopoulos, P. et al., Histone recognition and large-scale structural analysis of the human bromodomain family. Cell(Cambridge,Mass.) (2012)

Release Date

2010-04-14

Peptides

Protein polybromo-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Protein polybromo-1

Related Entries With Identical Sequence