SMTL ID : 3qnv.1

Carboxypeptidase T

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.69 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.69, E.72, H.204, T.205 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.69, A:E.72, A:E.72, A:H.204, H2O.9

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 8 residues within 4Å: Chain A: H.69, R.129, N.146, R.147, Y.255, E.277 Ligands: GOL.6, GOL.8 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.146, A:Y.255 Salt bridges: A:H.69, A:R.129, A:R.147, A:H.204 SO4.3: 5 residues within 4Å: Chain A: F.174, R.183, N.187, W.264, Q.268 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.187, A:W.264 Water bridges: A:Q.268 SO4.4: 4 residues within 4Å: Chain A: V.16, N.20, K.32, W.45 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.20 Water bridges: A:N.17 Salt bridges: A:K.32 SO4.5: 3 residues within 4Å: Chain A: H.10, K.18 Ligands: GOL.9 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:H.10, A:K.18

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 4 residues within 4Å: Chain A: Y.206, Y.255, E.277 Ligands: SO4.2 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.205 GOL.7: 3 residues within 4Å: Chain A: K.152, C.156, Y.216 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.152, A:K.152 Water bridges: A:Y.216 GOL.8: 8 residues within 4Å: Chain A: L.211, A.251, Y.255, T.257, D.260, T.262, T.275 Ligands: SO4.2 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:Y.255, A:Y.255, A:T.257, A:D.260, A:T.275 Water bridges: A:N.146, A:G.215, A:T.257, A:D.263 GOL.9: 7 residues within 4Å: Chain A: H.10, E.77, L.80, Y.81, D.84, I.294 Ligands: SO4.5 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:H.10, A:H.10, A:E.77, A:D.84, A:D.84

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Akparov, V.K. et al., Three-dimensional structure of recombinant carboxypeptidase T from Thermoactinomyces vulgaris without calcium ions. Crystallography Reports (2011)

Release Date

2012-02-15

Peptides

Carboxypeptidase T: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Carboxypeptidase T

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