SMTL ID : 7q87.1

Carboxypeptidase T with (S)-3-phenyllactic acid

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.73 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: H.69, E.72, H.204, T.205 Ligands: HFA.3 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Ligand interactions Metal complexes: A:H.69, A:E.72, A:E.72, A:H.204, HFA.3

2 x HFA: ALPHA-HYDROXY-BETA-PHENYL-PROPIONIC ACID(Non-covalent)

HFA.2: 13 residues within 4Å: Chain A: H.69, R.129, N.146, R.147, L.211, A.251, L.254, Y.255, T.257, D.260, T.275, E.277 Ligands: HFA.3 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:L.211, A:A.251, A:L.254, A:Y.255, A:T.257, A:T.275 Hydrogen bonds: A:N.146, A:Y.255, A:Y.255, A:Y.255 Salt bridges: A:H.69, A:R.129, A:R.147, A:H.204 HFA.3: 11 residues within 4Å: Chain A: H.69, E.72, R.129, H.204, T.205, Y.206, L.254, Y.255, E.277 Ligands: ZN.1, HFA.2 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:L.254, A:Y.255 Hydrogen bonds: A:R.129 Water bridges: A:R.71, A:E.72 Salt bridges: A:H.69, A:R.129, A:H.204 pi-Stacking: A:Y.206

6 x CA: CALCIUM ION(Non-covalent)

CA.4: 5 residues within 4Å: Chain A: S.50, D.51, E.57, E.59 Ligands: CA.8 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:S.50, A:D.51, A:E.57, A:E.59, H2O.4 CA.5: 6 residues within 4Å: Chain A: D.56, E.57, E.59, E.61, E.104, R.189 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.56, A:E.57, A:E.61, A:E.104, H2O.2, H2O.7 CA.6: 3 residues within 4Å: Chain A: S.7, Y.9, E.14 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:S.7, A:Y.9, A:E.14, H2O.9, H2O.11 CA.7: 3 residues within 4Å: Chain A: Y.5, D.291, E.292 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:Y.5, A:D.291, A:E.292, H2O.6, H2O.11 CA.8: 5 residues within 4Å: Chain A: D.51, E.57, E.59, N.101 Ligands: CA.4 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:E.59, A:N.101, H2O.2, H2O.8, H2O.10 CA.9: 4 residues within 4Å: Chain A: Y.218, D.220, Q.250, D.253 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:Y.218, A:D.220, H2O.1, H2O.4, H2O.10

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.10: 5 residues within 4Å: Chain A: F.174, R.183, N.187, W.264, Q.268 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.187, A:W.264 Water bridges: A:R.183, A:Q.268

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Timofeev, V.I. et al., Carboxypeptidase T with (S)-3-phenyllactic acid. To Be Published

Release Date

2022-01-26

Peptides

Carboxypeptidase T: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Carboxypeptidase T

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