SMTL ID : 3qp0.1

HIV-1 protease (mutant Q7K L33I L63I) in complex with a novel inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.45 Å

Oligo State

homo-dimer

Ligands

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 3 residues within 4Å: Chain A: G.73, T.74, N.88 Ligand excluded by PLIP CL.2: 3 residues within 4Å: Chain B: G.73, T.74, N.88 Ligand excluded by PLIP CL.3: 1 residues within 4Å: Chain B: W.6 Ligand excluded by PLIP

1 x NI8: (4aS,7aS)-1,4-bis[3-(hydroxymethyl)benzyl]hexahydro-1H-pyrrolo[3,4-b]pyrazine-2,3-dione(Non-covalent)

NI8.4: 18 residues within 4Å: Chain A: D.25, G.27, A.28, D.29, D.30, V.32, I.47, G.48, G.49, I.50 Chain B: D.25, G.27, A.28, D.29, D.30, G.48, G.49, I.50 19 PLIP interactions: 11 interactions with chain A, 8 interactions with chain B Hydrophobic interactions: A:A.28, A:V.32, A:I.50, B:A.28, B:I.50 Hydrogen bonds: A:D.25, A:D.29, A:D.30, A:D.30, A:D.30, B:D.29, B:D.29, B:I.50 Water bridges: A:G.49, A:I.50, A:I.50, B:G.48, B:G.48, B:G.51

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lindemann, I. et al., Novel inhibitors for HIV-1 protease. To be Published

Release Date

2012-02-15

Peptides

Protease: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Protease

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