SMTL ID : 3qqp.1

Crystal Structure of 11beta-Hydroxysteroid Dehydrogenase 1 (11b-HSD1) in Complex with Urea Inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.72 Å

Oligo State

homo-tetramer

Ligands

4 x S05: 3,4-dihydroquinolin-1(2H)-yl[4-(1H-imidazol-5-yl)piperidin-1-yl]methanone(Non-covalent)

S05.1: 11 residues within 4Å: Chain A: I.115, T.118, S.164, V.174, Y.177, L.209, G.210, L.211, T.216, A.217 Ligands: NDP.2 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:T.118, A:V.174, A:L.211 Hydrogen bonds: A:S.164, A:Y.177 S05.3: 12 residues within 4Å: Chain B: T.118, L.120, S.164, V.174, Y.177, G.210, L.211, T.216, A.217, V.225, M.227 Ligands: NDP.4 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:T.118, B:L.120, B:L.211, B:V.225 Hydrogen bonds: B:S.164 pi-Stacking: B:Y.171 S05.5: 10 residues within 4Å: Chain C: L.120, S.164, V.174, Y.177, G.210, L.211, T.216, A.217, A.220 Ligands: NDP.6 8 PLIP interactions: 8 interactions with chain C Hydrophobic interactions: C:L.120, C:V.174, C:Y.177, C:L.211, C:A.220 Hydrogen bonds: C:S.164, C:Y.177 pi-Stacking: C:Y.171 S05.7: 14 residues within 4Å: Chain D: I.115, S.164, A.166, Y.171, V.174, Y.177, L.209, G.210, L.211, T.216, A.217, V.225, M.227 Ligands: NDP.8 4 PLIP interactions: 4 interactions with chain D Hydrophobic interactions: D:Y.171, D:Y.177, D:V.225 Hydrogen bonds: D:S.164

4 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NDP.2: 29 residues within 4Å: Chain A: G.35, A.36, S.37, K.38, G.39, I.40, A.59, R.60, S.61, T.86, M.87, N.113, H.114, I.115, V.136, Y.141, V.162, S.163, S.164, Y.177, K.181, L.209, G.210, L.211, I.212, T.214, T.216, A.217 Ligands: S05.1 29 PLIP interactions: 29 interactions with chain A Hydrophobic interactions: A:L.209 Hydrogen bonds: A:G.35, A:S.37, A:S.37, A:K.38, A:I.40, A:R.60, A:S.61, A:T.86, A:M.87, A:N.113, A:N.113, A:I.115, A:Y.141, A:K.181, A:I.212, A:I.212, A:T.214, A:T.216 Water bridges: A:S.37, A:K.38, A:K.38, A:G.41, A:R.60, A:R.60, A:T.64, A:T.214 Salt bridges: A:K.38, A:R.60 NDP.4: 31 residues within 4Å: Chain B: G.35, A.36, S.37, K.38, G.39, I.40, A.59, R.60, S.61, G.85, T.86, M.87, N.113, H.114, I.115, N.117, V.136, Y.141, V.162, S.163, S.164, Y.177, K.181, L.209, G.210, L.211, I.212, T.214, T.216, A.217 Ligands: S05.3 29 PLIP interactions: 29 interactions with chain B Hydrophobic interactions: B:L.209 Hydrogen bonds: B:G.35, B:S.37, B:S.37, B:K.38, B:I.40, B:R.60, B:S.61, B:T.86, B:T.86, B:M.87, B:N.113, B:N.113, B:I.115, B:Y.141, B:Y.177, B:K.181, B:I.212, B:I.212, B:T.214, B:T.214, B:T.216, B:T.216 Water bridges: B:T.116, B:T.116, B:T.216 Salt bridges: B:K.38, B:K.38, B:R.60 NDP.6: 29 residues within 4Å: Chain C: G.35, A.36, S.37, K.38, G.39, I.40, A.59, R.60, S.61, T.86, M.87, N.113, H.114, I.115, N.117, Y.141, V.162, S.163, S.164, Y.177, K.181, L.209, G.210, L.211, I.212, T.214, T.216, A.217 Ligands: S05.5 23 PLIP interactions: 23 interactions with chain C Hydrophobic interactions: C:L.209, C:I.212 Hydrogen bonds: C:S.37, C:S.37, C:K.38, C:K.38, C:I.40, C:R.60, C:S.61, C:T.86, C:M.87, C:N.113, C:N.113, C:I.115, C:N.117, C:K.181, C:I.212, C:I.212, C:T.214, C:T.216 Water bridges: C:G.41 Salt bridges: C:K.38, C:R.60 NDP.8: 30 residues within 4Å: Chain D: G.35, A.36, S.37, K.38, G.39, I.40, A.59, R.60, S.61, G.85, T.86, M.87, N.113, H.114, I.115, N.117, Y.141, V.162, S.163, S.164, Y.177, K.181, L.209, G.210, L.211, I.212, T.214, T.216, A.217 Ligands: S05.7 24 PLIP interactions: 24 interactions with chain D Hydrophobic interactions: D:L.209 Hydrogen bonds: D:S.37, D:S.37, D:K.38, D:K.38, D:I.40, D:R.60, D:S.61, D:T.86, D:T.86, D:M.87, D:N.113, D:N.113, D:I.115, D:Y.177, D:K.181, D:I.212, D:I.212, D:T.214, D:T.214, D:T.216 Water bridges: D:T.216 Salt bridges: D:K.38, D:R.60

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Venier, O. et al., Pyrrolidine-pyrazole ureas as potent and selective inhibitors of 11beta-hydroxysteroid-dehydrogenase type 1. Bioorg.Med.Chem.Lett. (2011)

Release Date

2012-02-22

Peptides

Corticosteroid 11-beta-dehydrogenase isozyme 1: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Corticosteroid 11-beta-dehydrogenase isozyme 1

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