- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.50 Å
- Oligo State
- homo-octamer
- Ligands
- 8 x ALA- TRP- LEU- PHE- GLU- ALA: peptide(Non-covalent)
- 8 x K: POTASSIUM ION(Non-covalent)
K.2: 6 residues within 4Å:- Chain A: N.64, D.126, F.129, V.158, V.160, S.162
5 PLIP interactions:5 interactions with chain A- Metal complexes: A:D.126, A:F.129, A:V.158, A:V.160, A:S.162
K.6: 6 residues within 4Å:- Chain B: N.64, D.126, F.129, V.158, V.160, S.162
5 PLIP interactions:5 interactions with chain B- Metal complexes: B:D.126, B:F.129, B:V.158, B:V.160, B:S.162
K.10: 6 residues within 4Å:- Chain C: N.64, D.126, F.129, V.158, V.160, S.162
5 PLIP interactions:5 interactions with chain C- Metal complexes: C:D.126, C:F.129, C:V.158, C:V.160, C:S.162
K.14: 6 residues within 4Å:- Chain D: N.64, D.126, F.129, V.158, V.160, S.162
5 PLIP interactions:5 interactions with chain D- Metal complexes: D:D.126, D:F.129, D:V.158, D:V.160, D:S.162
K.18: 6 residues within 4Å:- Chain E: N.64, D.126, F.129, V.158, V.160, S.162
5 PLIP interactions:5 interactions with chain E- Metal complexes: E:D.126, E:F.129, E:V.158, E:V.160, E:S.162
K.22: 6 residues within 4Å:- Chain F: N.64, D.126, F.129, V.158, V.160, S.162
5 PLIP interactions:5 interactions with chain F- Metal complexes: F:D.126, F:F.129, F:V.158, F:V.160, F:S.162
K.26: 6 residues within 4Å:- Chain G: N.64, D.126, F.129, V.158, V.160, S.162
5 PLIP interactions:5 interactions with chain G- Metal complexes: G:D.126, G:F.129, G:V.158, G:V.160, G:S.162
K.30: 6 residues within 4Å:- Chain H: N.64, D.126, F.129, V.158, V.160, S.162
5 PLIP interactions:5 interactions with chain H- Metal complexes: H:D.126, H:F.129, H:V.158, H:V.160, H:S.162
- 8 x AP5: BIS(ADENOSINE)-5'-PENTAPHOSPHATE(Non-covalent)
AP5.3: 12 residues within 4Å:- Chain A: K.14, G.62, N.63, N.64, F.129, G.130, G.132, L.133, R.134, G.135, E.136, Y.141
11 PLIP interactions:11 interactions with chain A- Hydrogen bonds: A:N.63, A:N.63, A:N.64, A:G.130, A:G.130, A:G.132, A:R.134, A:E.136
- Water bridges: A:G.62, A:T.138
- Salt bridges: A:R.134
AP5.7: 12 residues within 4Å:- Chain B: K.14, G.62, N.63, N.64, F.129, G.130, G.132, L.133, R.134, G.135, E.136, Y.141
11 PLIP interactions:11 interactions with chain B- Hydrogen bonds: B:N.63, B:N.63, B:N.64, B:G.130, B:G.130, B:G.132, B:R.134, B:E.136
- Water bridges: B:G.62, B:T.138
- Salt bridges: B:R.134
AP5.11: 12 residues within 4Å:- Chain C: K.14, G.62, N.63, N.64, F.129, G.130, G.132, L.133, R.134, G.135, E.136, Y.141
11 PLIP interactions:11 interactions with chain C- Hydrogen bonds: C:N.63, C:N.63, C:N.64, C:G.130, C:G.130, C:G.132, C:R.134, C:E.136
- Water bridges: C:G.62, C:T.138
- Salt bridges: C:R.134
AP5.15: 12 residues within 4Å:- Chain D: K.14, G.62, N.63, N.64, F.129, G.130, G.132, L.133, R.134, G.135, E.136, Y.141
11 PLIP interactions:11 interactions with chain D- Hydrogen bonds: D:N.63, D:N.63, D:N.64, D:G.130, D:G.130, D:G.132, D:R.134, D:E.136
- Water bridges: D:G.62, D:T.138
- Salt bridges: D:R.134
AP5.19: 12 residues within 4Å:- Chain E: K.14, G.62, N.63, N.64, F.129, G.130, G.132, L.133, R.134, G.135, E.136, Y.141
11 PLIP interactions:11 interactions with chain E- Hydrogen bonds: E:N.63, E:N.63, E:N.64, E:G.130, E:G.130, E:G.132, E:R.134, E:E.136
- Water bridges: E:G.62, E:T.138
- Salt bridges: E:R.134
AP5.23: 12 residues within 4Å:- Chain F: K.14, G.62, N.63, N.64, F.129, G.130, G.132, L.133, R.134, G.135, E.136, Y.141
11 PLIP interactions:11 interactions with chain F- Hydrogen bonds: F:N.63, F:N.63, F:N.64, F:G.130, F:G.130, F:G.132, F:R.134, F:E.136
- Water bridges: F:G.62, F:T.138
- Salt bridges: F:R.134
AP5.27: 12 residues within 4Å:- Chain G: K.14, G.62, N.63, N.64, F.129, G.130, G.132, L.133, R.134, G.135, E.136, Y.141
11 PLIP interactions:11 interactions with chain G- Hydrogen bonds: G:N.63, G:N.63, G:N.64, G:G.130, G:G.130, G:G.132, G:R.134, G:E.136
- Water bridges: G:G.62, G:T.138
- Salt bridges: G:R.134
AP5.31: 12 residues within 4Å:- Chain H: K.14, G.62, N.63, N.64, F.129, G.130, G.132, L.133, R.134, G.135, E.136, Y.141
11 PLIP interactions:11 interactions with chain H- Hydrogen bonds: H:N.63, H:N.63, H:N.64, H:G.130, H:G.130, H:G.132, H:R.134, H:E.136
- Water bridges: H:G.62, H:T.138
- Salt bridges: H:R.134
- 8 x GOL: GLYCEROL(Non-functional Binders)
GOL.4: 4 residues within 4Å:- Chain A: D.17, M.32, D.67, I.208
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:D.17, A:D.67
GOL.8: 4 residues within 4Å:- Chain B: D.17, M.32, D.67, I.208
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:D.17, B:D.67
GOL.12: 4 residues within 4Å:- Chain C: D.17, M.32, D.67, I.208
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:D.17, C:D.67
GOL.16: 4 residues within 4Å:- Chain D: D.17, M.32, D.67, I.208
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:D.17, D:D.67
GOL.20: 4 residues within 4Å:- Chain E: D.17, M.32, D.67, I.208
2 PLIP interactions:2 interactions with chain E- Hydrogen bonds: E:D.17, E:D.67
GOL.24: 4 residues within 4Å:- Chain F: D.17, M.32, D.67, I.208
2 PLIP interactions:2 interactions with chain F- Hydrogen bonds: F:D.17, F:D.67
GOL.28: 4 residues within 4Å:- Chain G: D.17, M.32, D.67, I.208
2 PLIP interactions:2 interactions with chain G- Hydrogen bonds: G:D.17, G:D.67
GOL.32: 4 residues within 4Å:- Chain H: D.17, M.32, D.67, I.208
2 PLIP interactions:2 interactions with chain H- Hydrogen bonds: H:D.17, H:D.67
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Shumilin, I.A. et al., Identification of unknown protein function using metabolite cocktail screening. Structure (2012)
- Release Date
- 2011-07-27
- Peptides
- Bifunctional NAD(P)H-hydrate repair enzyme Nnr: ABCDEFGH
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
AG
AH
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.50 Å
- Oligo State
- homo-octamer
- Ligands
- 8 x ALA- TRP- LEU- PHE- GLU- ALA: peptide(Non-covalent)
- 8 x K: POTASSIUM ION(Non-covalent)
- 8 x AP5: BIS(ADENOSINE)-5'-PENTAPHOSPHATE(Non-covalent)
- 8 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Shumilin, I.A. et al., Identification of unknown protein function using metabolite cocktail screening. Structure (2012)
- Release Date
- 2011-07-27
- Peptides
- Bifunctional NAD(P)H-hydrate repair enzyme Nnr: ABCDEFGH
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
AG
AH
A