- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- homo-octamer
- Ligands
- 8 x ALA- TRP- LEU- PHE- GLU- ALA: Unknown peptide, probably from expression host(Non-covalent)
- 8 x K: POTASSIUM ION(Non-covalent)
K.2: 6 residues within 4Å:- Chain A: N.64, D.126, F.129, V.158, V.160, S.162
5 PLIP interactions:5 interactions with chain A- Metal complexes: A:D.126, A:F.129, A:V.158, A:V.160, A:S.162
K.6: 6 residues within 4Å:- Chain B: N.64, D.126, F.129, V.158, V.160, S.162
5 PLIP interactions:5 interactions with chain B- Metal complexes: B:D.126, B:F.129, B:V.158, B:V.160, B:S.162
K.10: 6 residues within 4Å:- Chain C: N.64, D.126, F.129, V.158, V.160, S.162
5 PLIP interactions:5 interactions with chain C- Metal complexes: C:D.126, C:F.129, C:V.158, C:V.160, C:S.162
K.14: 6 residues within 4Å:- Chain D: N.64, D.126, F.129, V.158, V.160, S.162
5 PLIP interactions:5 interactions with chain D- Metal complexes: D:D.126, D:F.129, D:V.158, D:V.160, D:S.162
K.18: 6 residues within 4Å:- Chain E: N.64, D.126, F.129, V.158, V.160, S.162
5 PLIP interactions:5 interactions with chain E- Metal complexes: E:D.126, E:F.129, E:V.158, E:V.160, E:S.162
K.22: 6 residues within 4Å:- Chain F: N.64, D.126, F.129, V.158, V.160, S.162
5 PLIP interactions:5 interactions with chain F- Metal complexes: F:D.126, F:F.129, F:V.158, F:V.160, F:S.162
K.26: 6 residues within 4Å:- Chain G: N.64, D.126, F.129, V.158, V.160, S.162
5 PLIP interactions:5 interactions with chain G- Metal complexes: G:D.126, G:F.129, G:V.158, G:V.160, G:S.162
K.30: 6 residues within 4Å:- Chain H: N.64, D.126, F.129, V.158, V.160, S.162
5 PLIP interactions:5 interactions with chain H- Metal complexes: H:D.126, H:F.129, H:V.158, H:V.160, H:S.162
- 8 x A3P: ADENOSINE-3'-5'-DIPHOSPHATE(Non-covalent)
A3P.3: 11 residues within 4Å:- Chain A: H.378, P.379, G.380, V.390, K.394, S.415
- Chain D: S.239, H.240, K.241, G.242, K.246
11 PLIP interactions:7 interactions with chain D, 4 interactions with chain A- Hydrogen bonds: D:K.241, D:G.242, A:G.380, A:K.394
- Salt bridges: D:H.240, D:K.241, D:K.246, A:H.378
- pi-Stacking: D:H.240, D:H.240
- Water bridges: A:K.394
A3P.7: 11 residues within 4Å:- Chain B: H.378, P.379, G.380, V.390, K.394, S.415
- Chain C: S.239, H.240, K.241, G.242, K.246
11 PLIP interactions:4 interactions with chain B, 7 interactions with chain C- Hydrogen bonds: B:G.380, B:K.394, C:K.241, C:G.242
- Water bridges: B:K.394
- Salt bridges: B:H.378, C:H.240, C:K.241, C:K.246
- pi-Stacking: C:H.240, C:H.240
A3P.11: 11 residues within 4Å:- Chain A: S.239, H.240, K.241, G.242, K.246
- Chain C: H.378, P.379, G.380, V.390, K.394, S.415
11 PLIP interactions:7 interactions with chain A, 4 interactions with chain C- Hydrogen bonds: A:K.241, A:G.242, C:G.380, C:K.394
- Salt bridges: A:H.240, A:K.241, A:K.246, C:H.378
- pi-Stacking: A:H.240, A:H.240
- Water bridges: C:K.394
A3P.15: 11 residues within 4Å:- Chain B: S.239, H.240, K.241, G.242, K.246
- Chain D: H.378, P.379, G.380, V.390, K.394, S.415
11 PLIP interactions:7 interactions with chain B, 4 interactions with chain D- Hydrogen bonds: B:K.241, B:G.242, D:G.380, D:K.394
- Salt bridges: B:H.240, B:K.241, B:K.246, D:H.378
- pi-Stacking: B:H.240, B:H.240
- Water bridges: D:K.394
A3P.19: 11 residues within 4Å:- Chain E: H.378, P.379, G.380, V.390, K.394, S.415
- Chain H: S.239, H.240, K.241, G.242, K.246
11 PLIP interactions:4 interactions with chain E, 7 interactions with chain H- Hydrogen bonds: E:G.380, E:K.394, H:K.241, H:G.242
- Water bridges: E:K.394
- Salt bridges: E:H.378, H:H.240, H:K.241, H:K.246
- pi-Stacking: H:H.240, H:H.240
A3P.23: 11 residues within 4Å:- Chain F: H.378, P.379, G.380, V.390, K.394, S.415
- Chain G: S.239, H.240, K.241, G.242, K.246
11 PLIP interactions:4 interactions with chain F, 7 interactions with chain G- Hydrogen bonds: F:G.380, F:K.394, G:K.241, G:G.242
- Water bridges: F:K.394
- Salt bridges: F:H.378, G:H.240, G:K.241, G:K.246
- pi-Stacking: G:H.240, G:H.240
A3P.27: 11 residues within 4Å:- Chain E: S.239, H.240, K.241, G.242, K.246
- Chain G: H.378, P.379, G.380, V.390, K.394, S.415
11 PLIP interactions:7 interactions with chain E, 4 interactions with chain G- Hydrogen bonds: E:K.241, E:G.242, G:G.380, G:K.394
- Salt bridges: E:H.240, E:K.241, E:K.246, G:H.378
- pi-Stacking: E:H.240, E:H.240
- Water bridges: G:K.394
A3P.31: 11 residues within 4Å:- Chain F: S.239, H.240, K.241, G.242, K.246
- Chain H: H.378, P.379, G.380, V.390, K.394, S.415
11 PLIP interactions:7 interactions with chain F, 4 interactions with chain H- Hydrogen bonds: F:K.241, F:G.242, H:G.380, H:K.394
- Salt bridges: F:H.240, F:K.241, F:K.246, H:H.378
- pi-Stacking: F:H.240, F:H.240
- Water bridges: H:K.394
- 8 x GOL: GLYCEROL(Non-functional Binders)
GOL.4: 6 residues within 4Å:- Chain A: D.17, L.31, M.32, D.67, F.184, I.208
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:D.17, A:D.67
- Water bridges: A:D.159
GOL.8: 6 residues within 4Å:- Chain B: D.17, L.31, M.32, D.67, F.184, I.208
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:D.17, B:D.67
- Water bridges: B:D.159
GOL.12: 6 residues within 4Å:- Chain C: D.17, L.31, M.32, D.67, F.184, I.208
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:D.17, C:D.67
- Water bridges: C:D.159
GOL.16: 6 residues within 4Å:- Chain D: D.17, L.31, M.32, D.67, F.184, I.208
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:D.17, D:D.67
- Water bridges: D:D.159
GOL.20: 6 residues within 4Å:- Chain E: D.17, L.31, M.32, D.67, F.184, I.208
3 PLIP interactions:3 interactions with chain E- Hydrogen bonds: E:D.17, E:D.67
- Water bridges: E:D.67
GOL.24: 6 residues within 4Å:- Chain F: D.17, L.31, M.32, D.67, F.184, I.208
3 PLIP interactions:3 interactions with chain F- Hydrogen bonds: F:D.17, F:D.67
- Water bridges: F:D.67
GOL.28: 6 residues within 4Å:- Chain G: D.17, L.31, M.32, D.67, F.184, I.208
3 PLIP interactions:3 interactions with chain G- Hydrogen bonds: G:D.17, G:D.67
- Water bridges: G:D.67
GOL.32: 6 residues within 4Å:- Chain H: D.17, L.31, M.32, D.67, F.184, I.208
3 PLIP interactions:3 interactions with chain H- Hydrogen bonds: H:D.17, H:D.67
- Water bridges: H:D.67
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Shumilin, I.A. et al., Identification of unknown protein function using metabolite cocktail screening. Structure (2012)
- Release Date
- 2011-07-27
- Peptides
- Putative uncharacterized protein: ABCDEFGH
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
AG
AH
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.10 Å
- Oligo State
- homo-octamer
- Ligands
- 8 x ALA- TRP- LEU- PHE- GLU- ALA: Unknown peptide, probably from expression host(Non-covalent)
- 8 x K: POTASSIUM ION(Non-covalent)
- 8 x A3P: ADENOSINE-3'-5'-DIPHOSPHATE(Non-covalent)
- 8 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Shumilin, I.A. et al., Identification of unknown protein function using metabolite cocktail screening. Structure (2012)
- Release Date
- 2011-07-27
- Peptides
- Putative uncharacterized protein: ABCDEFGH
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
AG
AH
A