- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.95 Å
- Oligo State
- homo-octamer
- Ligands
- 8 x ALA- TRP- LEU- PHE- GLU- ALA: Unknown peptide, probably from expression host(Non-covalent)
- 8 x K: POTASSIUM ION(Non-covalent)
K.2: 6 residues within 4Å:- Chain A: N.64, D.126, F.129, V.158, V.160, S.162
5 PLIP interactions:5 interactions with chain A- Metal complexes: A:D.126, A:F.129, A:V.158, A:V.160, A:S.162
K.8: 6 residues within 4Å:- Chain B: N.64, D.126, F.129, V.158, V.160, S.162
5 PLIP interactions:5 interactions with chain B- Metal complexes: B:D.126, B:F.129, B:V.158, B:V.160, B:S.162
K.14: 6 residues within 4Å:- Chain C: N.64, D.126, F.129, V.158, V.160, S.162
5 PLIP interactions:5 interactions with chain C- Metal complexes: C:D.126, C:F.129, C:V.158, C:V.160, C:S.162
K.20: 6 residues within 4Å:- Chain D: N.64, D.126, F.129, V.158, V.160, S.162
5 PLIP interactions:5 interactions with chain D- Metal complexes: D:D.126, D:F.129, D:V.158, D:V.160, D:S.162
K.26: 6 residues within 4Å:- Chain E: N.64, D.126, F.129, V.158, V.160, S.162
5 PLIP interactions:5 interactions with chain E- Metal complexes: E:D.126, E:F.129, E:V.158, E:V.160, E:S.162
K.32: 6 residues within 4Å:- Chain F: N.64, D.126, F.129, V.158, V.160, S.162
5 PLIP interactions:5 interactions with chain F- Metal complexes: F:D.126, F:F.129, F:V.158, F:V.160, F:S.162
K.38: 6 residues within 4Å:- Chain G: N.64, D.126, F.129, V.158, V.160, S.162
5 PLIP interactions:5 interactions with chain G- Metal complexes: G:D.126, G:F.129, G:V.158, G:V.160, G:S.162
K.44: 6 residues within 4Å:- Chain H: N.64, D.126, F.129, V.158, V.160, S.162
5 PLIP interactions:5 interactions with chain H- Metal complexes: H:D.126, H:F.129, H:V.158, H:V.160, H:S.162
- 32 x COA: COENZYME A(Non-covalent)
COA.3: 20 residues within 4Å:- Chain A: K.14, D.17, L.31, M.32, G.62, N.63, N.64, D.67, K.90, F.129, G.130, T.131, G.132, L.133, R.134, G.135, E.136, Y.141, D.159, I.208
14 PLIP interactions:14 interactions with chain A- Hydrophobic interactions: A:K.14
- Hydrogen bonds: A:N.63, A:N.64, A:G.130, A:T.131, A:G.132, A:L.133, A:R.134, A:E.136
- Water bridges: A:D.17, A:G.62, A:G.62, A:H.210
- Salt bridges: A:K.90
COA.4: 18 residues within 4Å:- Chain A: Y.256, H.378, P.379, G.380, R.384, V.390, K.394, S.415
- Chain D: H.240, K.241, G.242, K.246, L.274, K.276, I.295, L.317
- Ligands: COA.5, COA.6
20 PLIP interactions:10 interactions with chain A, 10 interactions with chain D- Hydrogen bonds: A:Y.256, A:G.380, A:S.415, D:H.240, D:K.276
- Water bridges: A:N.359, A:R.384, A:R.384, A:R.384, A:K.394, D:G.242, D:K.246
- Salt bridges: A:H.378, A:R.384, D:H.240, D:K.241, D:K.246, D:K.246
- pi-Stacking: D:H.240, D:H.240
COA.5: 9 residues within 4Å:- Chain A: T.168, K.170, F.194, G.391, K.394, Y.395
- Chain D: D.238, H.240
- Ligands: COA.4
10 PLIP interactions:2 interactions with chain D, 8 interactions with chain A- Water bridges: D:H.240, A:T.389, A:K.394
- Salt bridges: D:H.240, A:K.394, A:K.394
- Hydrogen bonds: A:K.170, A:K.170, A:F.194, A:G.391
COA.6: 7 residues within 4Å:- Chain A: L.255, K.303, F.305, N.332, N.333, H.335
- Ligands: COA.4
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:N.333
- Water bridges: A:Y.256, A:E.334
- Salt bridges: A:K.303, A:H.335
COA.9: 20 residues within 4Å:- Chain B: K.14, D.17, L.31, M.32, G.62, N.63, N.64, D.67, K.90, F.129, G.130, T.131, G.132, L.133, R.134, G.135, E.136, Y.141, D.159, I.208
14 PLIP interactions:14 interactions with chain B- Hydrophobic interactions: B:K.14
- Hydrogen bonds: B:N.63, B:N.64, B:G.130, B:T.131, B:G.132, B:L.133, B:R.134, B:E.136
- Water bridges: B:D.17, B:G.62, B:G.62, B:H.210
- Salt bridges: B:K.90
COA.10: 18 residues within 4Å:- Chain B: Y.256, H.378, P.379, G.380, R.384, V.390, K.394, S.415
- Chain C: H.240, K.241, G.242, K.246, L.274, K.276, I.295, L.317
- Ligands: COA.11, COA.12
20 PLIP interactions:10 interactions with chain C, 10 interactions with chain B- Hydrogen bonds: C:H.240, C:K.276, B:Y.256, B:G.380, B:S.415
- Water bridges: C:G.242, C:K.246, B:N.359, B:R.384, B:R.384, B:R.384, B:K.394
- Salt bridges: C:H.240, C:K.241, C:K.246, C:K.246, B:H.378, B:R.384
- pi-Stacking: C:H.240, C:H.240
COA.11: 9 residues within 4Å:- Chain B: T.168, K.170, F.194, G.391, K.394, Y.395
- Chain C: D.238, H.240
- Ligands: COA.10
10 PLIP interactions:8 interactions with chain B, 2 interactions with chain C- Hydrogen bonds: B:K.170, B:K.170, B:F.194, B:G.391
- Water bridges: B:T.389, B:K.394, C:H.240
- Salt bridges: B:K.394, B:K.394, C:H.240
COA.12: 7 residues within 4Å:- Chain B: L.255, K.303, F.305, N.332, N.333, H.335
- Ligands: COA.10
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:N.333
- Water bridges: B:Y.256, B:E.334
- Salt bridges: B:K.303, B:H.335
COA.15: 20 residues within 4Å:- Chain C: K.14, D.17, L.31, M.32, G.62, N.63, N.64, D.67, K.90, F.129, G.130, T.131, G.132, L.133, R.134, G.135, E.136, Y.141, D.159, I.208
14 PLIP interactions:14 interactions with chain C- Hydrophobic interactions: C:K.14
- Hydrogen bonds: C:N.63, C:N.64, C:G.130, C:T.131, C:G.132, C:L.133, C:R.134, C:E.136
- Water bridges: C:D.17, C:G.62, C:G.62, C:H.210
- Salt bridges: C:K.90
COA.16: 18 residues within 4Å:- Chain A: H.240, K.241, G.242, K.246, L.274, K.276, I.295, L.317
- Chain C: Y.256, H.378, P.379, G.380, R.384, V.390, K.394, S.415
- Ligands: COA.17, COA.18
20 PLIP interactions:10 interactions with chain A, 10 interactions with chain C- Hydrogen bonds: A:H.240, A:K.276, C:Y.256, C:G.380, C:S.415
- Water bridges: A:G.242, A:K.246, C:N.359, C:R.384, C:R.384, C:R.384, C:K.394
- Salt bridges: A:H.240, A:K.241, A:K.246, A:K.246, C:H.378, C:R.384
- pi-Stacking: A:H.240, A:H.240
COA.17: 9 residues within 4Å:- Chain A: D.238, H.240
- Chain C: T.168, K.170, F.194, G.391, K.394, Y.395
- Ligands: COA.16
10 PLIP interactions:8 interactions with chain C, 2 interactions with chain A- Hydrogen bonds: C:K.170, C:K.170, C:F.194, C:G.391
- Water bridges: C:T.389, C:K.394, A:H.240
- Salt bridges: C:K.394, C:K.394, A:H.240
COA.18: 7 residues within 4Å:- Chain C: L.255, K.303, F.305, N.332, N.333, H.335
- Ligands: COA.16
5 PLIP interactions:5 interactions with chain C- Hydrogen bonds: C:N.333
- Water bridges: C:Y.256, C:E.334
- Salt bridges: C:K.303, C:H.335
COA.21: 20 residues within 4Å:- Chain D: K.14, D.17, L.31, M.32, G.62, N.63, N.64, D.67, K.90, F.129, G.130, T.131, G.132, L.133, R.134, G.135, E.136, Y.141, D.159, I.208
14 PLIP interactions:14 interactions with chain D- Hydrophobic interactions: D:K.14
- Hydrogen bonds: D:N.63, D:N.64, D:G.130, D:T.131, D:G.132, D:L.133, D:R.134, D:E.136
- Water bridges: D:D.17, D:G.62, D:G.62, D:H.210
- Salt bridges: D:K.90
COA.22: 18 residues within 4Å:- Chain B: H.240, K.241, G.242, K.246, L.274, K.276, I.295, L.317
- Chain D: Y.256, H.378, P.379, G.380, R.384, V.390, K.394, S.415
- Ligands: COA.23, COA.24
20 PLIP interactions:10 interactions with chain D, 10 interactions with chain B- Hydrogen bonds: D:Y.256, D:G.380, D:S.415, B:H.240, B:K.276
- Water bridges: D:N.359, D:R.384, D:R.384, D:R.384, D:K.394, B:G.242, B:K.246
- Salt bridges: D:H.378, D:R.384, B:H.240, B:K.241, B:K.246, B:K.246
- pi-Stacking: B:H.240, B:H.240
COA.23: 9 residues within 4Å:- Chain B: D.238, H.240
- Chain D: T.168, K.170, F.194, G.391, K.394, Y.395
- Ligands: COA.22
10 PLIP interactions:8 interactions with chain D, 2 interactions with chain B- Hydrogen bonds: D:K.170, D:K.170, D:F.194, D:G.391
- Water bridges: D:T.389, D:K.394, B:H.240
- Salt bridges: D:K.394, D:K.394, B:H.240
COA.24: 7 residues within 4Å:- Chain D: L.255, K.303, F.305, N.332, N.333, H.335
- Ligands: COA.22
5 PLIP interactions:5 interactions with chain D- Hydrogen bonds: D:N.333
- Water bridges: D:Y.256, D:E.334
- Salt bridges: D:K.303, D:H.335
COA.27: 20 residues within 4Å:- Chain E: K.14, D.17, L.31, M.32, G.62, N.63, N.64, D.67, K.90, F.129, G.130, T.131, G.132, L.133, R.134, G.135, E.136, Y.141, D.159, I.208
18 PLIP interactions:18 interactions with chain E- Hydrophobic interactions: E:K.14
- Hydrogen bonds: E:D.17, E:N.63, E:N.64, E:G.130, E:T.131, E:T.131, E:G.132, E:L.133, E:R.134, E:E.136
- Water bridges: E:D.17, E:G.62, E:G.62, E:D.159, E:D.159, E:H.210
- Salt bridges: E:K.90
COA.28: 18 residues within 4Å:- Chain E: Y.256, H.378, P.379, G.380, R.384, V.390, K.394, S.415
- Chain H: H.240, K.241, G.242, K.246, L.274, K.276, I.295, L.317
- Ligands: COA.29, COA.30
21 PLIP interactions:11 interactions with chain E, 10 interactions with chain H- Hydrogen bonds: E:Y.256, E:Y.256, E:G.380, E:S.415, H:K.276, H:D.320
- Water bridges: E:N.359, E:E.381, E:R.384, E:R.384, E:K.394, H:G.242, H:K.246
- Salt bridges: E:H.378, E:R.384, H:H.240, H:K.241, H:K.246, H:K.246
- pi-Stacking: H:H.240, H:H.240
COA.29: 9 residues within 4Å:- Chain E: T.168, K.170, F.194, G.391, K.394, Y.395
- Chain H: D.238, H.240
- Ligands: COA.28
11 PLIP interactions:9 interactions with chain E, 2 interactions with chain H- Hydrogen bonds: E:K.170, E:K.170, E:F.194, E:G.391
- Water bridges: E:T.389, E:T.389, E:K.394, H:D.238
- Salt bridges: E:K.394, E:K.394, H:H.240
COA.30: 7 residues within 4Å:- Chain E: L.255, K.303, F.305, N.332, N.333, H.335
- Ligands: COA.28
5 PLIP interactions:5 interactions with chain E- Hydrogen bonds: E:N.333
- Water bridges: E:Y.256, E:E.334
- Salt bridges: E:K.303, E:H.335
COA.33: 20 residues within 4Å:- Chain F: K.14, D.17, L.31, M.32, G.62, N.63, N.64, D.67, K.90, F.129, G.130, T.131, G.132, L.133, R.134, G.135, E.136, Y.141, D.159, I.208
18 PLIP interactions:18 interactions with chain F- Hydrophobic interactions: F:K.14
- Hydrogen bonds: F:D.17, F:N.63, F:N.64, F:G.130, F:T.131, F:T.131, F:G.132, F:L.133, F:R.134, F:E.136
- Water bridges: F:D.17, F:G.62, F:G.62, F:D.159, F:D.159, F:H.210
- Salt bridges: F:K.90
COA.34: 18 residues within 4Å:- Chain F: Y.256, H.378, P.379, G.380, R.384, V.390, K.394, S.415
- Chain G: H.240, K.241, G.242, K.246, L.274, K.276, I.295, L.317
- Ligands: COA.35, COA.36
21 PLIP interactions:10 interactions with chain G, 11 interactions with chain F- Hydrogen bonds: G:K.276, G:D.320, F:Y.256, F:Y.256, F:G.380, F:S.415
- Water bridges: G:G.242, G:K.246, F:N.359, F:E.381, F:R.384, F:R.384, F:K.394
- Salt bridges: G:H.240, G:K.241, G:K.246, G:K.246, F:H.378, F:R.384
- pi-Stacking: G:H.240, G:H.240
COA.35: 9 residues within 4Å:- Chain F: T.168, K.170, F.194, G.391, K.394, Y.395
- Chain G: D.238, H.240
- Ligands: COA.34
11 PLIP interactions:9 interactions with chain F, 2 interactions with chain G- Hydrogen bonds: F:K.170, F:K.170, F:F.194, F:G.391
- Water bridges: F:T.389, F:T.389, F:K.394, G:D.238
- Salt bridges: F:K.394, F:K.394, G:H.240
COA.36: 7 residues within 4Å:- Chain F: L.255, K.303, F.305, N.332, N.333, H.335
- Ligands: COA.34
5 PLIP interactions:5 interactions with chain F- Hydrogen bonds: F:N.333
- Water bridges: F:Y.256, F:E.334
- Salt bridges: F:K.303, F:H.335
COA.39: 20 residues within 4Å:- Chain G: K.14, D.17, L.31, M.32, G.62, N.63, N.64, D.67, K.90, F.129, G.130, T.131, G.132, L.133, R.134, G.135, E.136, Y.141, D.159, I.208
18 PLIP interactions:18 interactions with chain G- Hydrophobic interactions: G:K.14
- Hydrogen bonds: G:D.17, G:N.63, G:N.64, G:G.130, G:T.131, G:T.131, G:G.132, G:L.133, G:R.134, G:E.136
- Water bridges: G:D.17, G:G.62, G:G.62, G:D.159, G:D.159, G:H.210
- Salt bridges: G:K.90
COA.40: 18 residues within 4Å:- Chain E: H.240, K.241, G.242, K.246, L.274, K.276, I.295, L.317
- Chain G: Y.256, H.378, P.379, G.380, R.384, V.390, K.394, S.415
- Ligands: COA.41, COA.42
21 PLIP interactions:10 interactions with chain E, 11 interactions with chain G- Hydrogen bonds: E:K.276, E:D.320, G:Y.256, G:Y.256, G:G.380, G:S.415
- Water bridges: E:G.242, E:K.246, G:N.359, G:E.381, G:R.384, G:R.384, G:K.394
- Salt bridges: E:H.240, E:K.241, E:K.246, E:K.246, G:H.378, G:R.384
- pi-Stacking: E:H.240, E:H.240
COA.41: 9 residues within 4Å:- Chain E: D.238, H.240
- Chain G: T.168, K.170, F.194, G.391, K.394, Y.395
- Ligands: COA.40
11 PLIP interactions:9 interactions with chain G, 2 interactions with chain E- Hydrogen bonds: G:K.170, G:K.170, G:F.194, G:G.391
- Water bridges: G:T.389, G:T.389, G:K.394, E:H.240
- Salt bridges: G:K.394, G:K.394, E:H.240
COA.42: 7 residues within 4Å:- Chain G: L.255, K.303, F.305, N.332, N.333, H.335
- Ligands: COA.40
5 PLIP interactions:5 interactions with chain G- Hydrogen bonds: G:N.333
- Water bridges: G:Y.256, G:E.334
- Salt bridges: G:K.303, G:H.335
COA.45: 20 residues within 4Å:- Chain H: K.14, D.17, L.31, M.32, G.62, N.63, N.64, D.67, K.90, F.129, G.130, T.131, G.132, L.133, R.134, G.135, E.136, Y.141, D.159, I.208
18 PLIP interactions:18 interactions with chain H- Hydrophobic interactions: H:K.14
- Hydrogen bonds: H:D.17, H:N.63, H:N.64, H:G.130, H:T.131, H:T.131, H:G.132, H:L.133, H:R.134, H:E.136
- Water bridges: H:D.17, H:G.62, H:G.62, H:D.159, H:D.159, H:H.210
- Salt bridges: H:K.90
COA.46: 18 residues within 4Å:- Chain F: H.240, K.241, G.242, K.246, L.274, K.276, I.295, L.317
- Chain H: Y.256, H.378, P.379, G.380, R.384, V.390, K.394, S.415
- Ligands: COA.47, COA.48
21 PLIP interactions:11 interactions with chain H, 10 interactions with chain F- Hydrogen bonds: H:Y.256, H:Y.256, H:G.380, H:S.415, F:K.276, F:D.320
- Water bridges: H:N.359, H:E.381, H:R.384, H:R.384, H:K.394, F:G.242, F:K.246
- Salt bridges: H:H.378, H:R.384, F:H.240, F:K.241, F:K.246, F:K.246
- pi-Stacking: F:H.240, F:H.240
COA.47: 9 residues within 4Å:- Chain F: D.238, H.240
- Chain H: T.168, K.170, F.194, G.391, K.394, Y.395
- Ligands: COA.46
11 PLIP interactions:9 interactions with chain H, 2 interactions with chain F- Hydrogen bonds: H:K.170, H:K.170, H:F.194, H:G.391
- Water bridges: H:T.389, H:T.389, H:K.394, F:H.240
- Salt bridges: H:K.394, H:K.394, F:H.240
COA.48: 7 residues within 4Å:- Chain H: L.255, K.303, F.305, N.332, N.333, H.335
- Ligands: COA.46
5 PLIP interactions:5 interactions with chain H- Hydrogen bonds: H:N.333
- Water bridges: H:Y.256, H:E.334
- Salt bridges: H:K.303, H:H.335
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Shumilin, I.A. et al., Identification of unknown protein function using metabolite cocktail screening. Structure (2012)
- Release Date
- 2011-06-22
- Peptides
- Putative uncharacterized protein: ABCDEFGH
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
AG
AH
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.95 Å
- Oligo State
- homo-octamer
- Ligands
- 8 x ALA- TRP- LEU- PHE- GLU- ALA: Unknown peptide, probably from expression host(Non-covalent)
- 8 x K: POTASSIUM ION(Non-covalent)
- 32 x COA: COENZYME A(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Shumilin, I.A. et al., Identification of unknown protein function using metabolite cocktail screening. Structure (2012)
- Release Date
- 2011-06-22
- Peptides
- Putative uncharacterized protein: ABCDEFGH
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
AG
AH
A