- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.95 Å
- Oligo State
- homo-octamer
- Ligands
- 8 x ALA- ALA- TRP- LEU- PHE- GLU- ALA: Unknown peptide, probably from expression host(Non-covalent)
- 8 x K: POTASSIUM ION(Non-covalent)
K.2: 7 residues within 4Å:- Chain A: N.64, D.126, I.128, F.129, V.158, V.160, S.162
4 PLIP interactions:4 interactions with chain A- Metal complexes: A:F.129, A:V.158, A:V.160, A:S.162
K.6: 7 residues within 4Å:- Chain B: N.64, D.126, I.128, F.129, V.158, V.160, S.162
4 PLIP interactions:4 interactions with chain B- Metal complexes: B:F.129, B:V.158, B:V.160, B:S.162
K.10: 7 residues within 4Å:- Chain C: N.64, D.126, I.128, F.129, V.158, V.160, S.162
4 PLIP interactions:4 interactions with chain C- Metal complexes: C:F.129, C:V.158, C:V.160, C:S.162
K.14: 7 residues within 4Å:- Chain D: N.64, D.126, I.128, F.129, V.158, V.160, S.162
4 PLIP interactions:4 interactions with chain D- Metal complexes: D:F.129, D:V.158, D:V.160, D:S.162
K.18: 7 residues within 4Å:- Chain E: N.64, D.126, I.128, F.129, V.158, V.160, S.162
4 PLIP interactions:4 interactions with chain E- Metal complexes: E:F.129, E:V.158, E:V.160, E:S.162
K.22: 7 residues within 4Å:- Chain F: N.64, D.126, I.128, F.129, V.158, V.160, S.162
4 PLIP interactions:4 interactions with chain F- Metal complexes: F:F.129, F:V.158, F:V.160, F:S.162
K.26: 7 residues within 4Å:- Chain G: N.64, D.126, I.128, F.129, V.158, V.160, S.162
4 PLIP interactions:4 interactions with chain G- Metal complexes: G:F.129, G:V.158, G:V.160, G:S.162
K.30: 7 residues within 4Å:- Chain H: N.64, D.126, I.128, F.129, V.158, V.160, S.162
4 PLIP interactions:4 interactions with chain H- Metal complexes: H:F.129, H:V.158, H:V.160, H:S.162
- 16 x ACO: ACETYL COENZYME *A(Non-covalent)
ACO.3: 23 residues within 4Å:- Chain A: K.14, D.17, I.21, M.32, A.35, G.62, N.63, N.64, D.67, K.90, D.94, F.129, G.130, T.131, G.132, L.133, R.134, G.135, E.136, Y.141, D.159, F.184, I.208
20 PLIP interactions:20 interactions with chain A- Hydrophobic interactions: A:I.21, A:N.63, A:N.64, A:D.159, A:F.184, A:I.208
- Hydrogen bonds: A:N.63, A:N.64, A:G.130, A:T.131, A:G.132, A:L.133, A:R.134, A:E.136, A:D.159
- Water bridges: A:G.62, A:G.62, A:K.90
- Salt bridges: A:K.14, A:K.90
ACO.4: 10 residues within 4Å:- Chain A: H.378, P.379, G.380, R.384, V.390, K.394, S.415
- Chain D: H.240, G.242, K.246
15 PLIP interactions:7 interactions with chain D, 8 interactions with chain A- Water bridges: D:H.240, D:G.242, A:N.359, A:R.384, A:K.394
- Salt bridges: D:H.240, D:K.246, D:K.246, A:H.378, A:R.384, A:R.384
- pi-Stacking: D:H.240, D:H.240
- Hydrogen bonds: A:G.380, A:S.415
ACO.7: 23 residues within 4Å:- Chain B: K.14, D.17, I.21, M.32, A.35, G.62, N.63, N.64, D.67, K.90, D.94, F.129, G.130, T.131, G.132, L.133, R.134, G.135, E.136, Y.141, D.159, F.184, I.208
20 PLIP interactions:20 interactions with chain B- Hydrophobic interactions: B:I.21, B:N.63, B:N.64, B:D.159, B:F.184, B:I.208
- Hydrogen bonds: B:N.63, B:N.64, B:G.130, B:T.131, B:G.132, B:L.133, B:R.134, B:E.136, B:D.159
- Water bridges: B:G.62, B:G.62, B:K.90
- Salt bridges: B:K.14, B:K.90
ACO.8: 10 residues within 4Å:- Chain B: H.378, P.379, G.380, R.384, V.390, K.394, S.415
- Chain C: H.240, G.242, K.246
15 PLIP interactions:7 interactions with chain C, 8 interactions with chain B- Water bridges: C:H.240, C:G.242, B:N.359, B:R.384, B:K.394
- Salt bridges: C:H.240, C:K.246, C:K.246, B:H.378, B:R.384, B:R.384
- pi-Stacking: C:H.240, C:H.240
- Hydrogen bonds: B:G.380, B:S.415
ACO.11: 23 residues within 4Å:- Chain C: K.14, D.17, I.21, M.32, A.35, G.62, N.63, N.64, D.67, K.90, D.94, F.129, G.130, T.131, G.132, L.133, R.134, G.135, E.136, Y.141, D.159, F.184, I.208
20 PLIP interactions:20 interactions with chain C- Hydrophobic interactions: C:I.21, C:N.63, C:N.64, C:D.159, C:F.184, C:I.208
- Hydrogen bonds: C:N.63, C:N.64, C:G.130, C:T.131, C:G.132, C:L.133, C:R.134, C:E.136, C:D.159
- Water bridges: C:G.62, C:G.62, C:K.90
- Salt bridges: C:K.14, C:K.90
ACO.12: 10 residues within 4Å:- Chain A: H.240, G.242, K.246
- Chain C: H.378, P.379, G.380, R.384, V.390, K.394, S.415
15 PLIP interactions:7 interactions with chain A, 8 interactions with chain C- Water bridges: A:H.240, A:G.242, C:N.359, C:R.384, C:K.394
- Salt bridges: A:H.240, A:K.246, A:K.246, C:H.378, C:R.384, C:R.384
- pi-Stacking: A:H.240, A:H.240
- Hydrogen bonds: C:G.380, C:S.415
ACO.15: 23 residues within 4Å:- Chain D: K.14, D.17, I.21, M.32, A.35, G.62, N.63, N.64, D.67, K.90, D.94, F.129, G.130, T.131, G.132, L.133, R.134, G.135, E.136, Y.141, D.159, F.184, I.208
20 PLIP interactions:20 interactions with chain D- Hydrophobic interactions: D:I.21, D:N.63, D:N.64, D:D.159, D:F.184, D:I.208
- Hydrogen bonds: D:N.63, D:N.64, D:G.130, D:T.131, D:G.132, D:L.133, D:R.134, D:E.136, D:D.159
- Water bridges: D:G.62, D:G.62, D:K.90
- Salt bridges: D:K.14, D:K.90
ACO.16: 10 residues within 4Å:- Chain B: H.240, G.242, K.246
- Chain D: H.378, P.379, G.380, R.384, V.390, K.394, S.415
15 PLIP interactions:8 interactions with chain D, 7 interactions with chain B- Hydrogen bonds: D:G.380, D:S.415
- Water bridges: D:N.359, D:R.384, D:K.394, B:H.240, B:G.242
- Salt bridges: D:H.378, D:R.384, D:R.384, B:H.240, B:K.246, B:K.246
- pi-Stacking: B:H.240, B:H.240
ACO.19: 23 residues within 4Å:- Chain E: K.14, D.17, I.21, M.32, A.35, G.62, N.63, N.64, D.67, K.90, D.94, F.129, G.130, T.131, G.132, L.133, R.134, G.135, E.136, Y.141, D.159, F.184, I.208
21 PLIP interactions:21 interactions with chain E- Hydrophobic interactions: E:I.21, E:N.63, E:N.64, E:D.159, E:F.184, E:I.208
- Hydrogen bonds: E:N.63, E:N.64, E:D.94, E:G.130, E:T.131, E:G.132, E:L.133, E:R.134, E:E.136, E:D.159
- Water bridges: E:G.62, E:G.62, E:K.90
- Salt bridges: E:K.14, E:K.90
ACO.20: 10 residues within 4Å:- Chain E: H.378, P.379, G.380, R.384, V.390, K.394, S.415
- Chain H: H.240, G.242, K.246
15 PLIP interactions:8 interactions with chain E, 7 interactions with chain H- Hydrogen bonds: E:G.380, E:S.415
- Water bridges: E:N.359, E:E.381, E:K.394, H:H.240, H:H.240
- Salt bridges: E:H.378, E:R.384, E:R.384, H:H.240, H:K.246, H:K.246
- pi-Stacking: H:H.240, H:H.240
ACO.23: 23 residues within 4Å:- Chain F: K.14, D.17, I.21, M.32, A.35, G.62, N.63, N.64, D.67, K.90, D.94, F.129, G.130, T.131, G.132, L.133, R.134, G.135, E.136, Y.141, D.159, F.184, I.208
21 PLIP interactions:21 interactions with chain F- Hydrophobic interactions: F:I.21, F:N.63, F:N.64, F:D.159, F:F.184, F:I.208
- Hydrogen bonds: F:N.63, F:N.64, F:D.94, F:G.130, F:T.131, F:G.132, F:L.133, F:R.134, F:E.136, F:D.159
- Water bridges: F:G.62, F:G.62, F:K.90
- Salt bridges: F:K.14, F:K.90
ACO.24: 10 residues within 4Å:- Chain F: H.378, P.379, G.380, R.384, V.390, K.394, S.415
- Chain G: H.240, G.242, K.246
15 PLIP interactions:8 interactions with chain F, 7 interactions with chain G- Hydrogen bonds: F:G.380, F:S.415
- Water bridges: F:N.359, F:E.381, F:K.394, G:H.240, G:H.240
- Salt bridges: F:H.378, F:R.384, F:R.384, G:H.240, G:K.246, G:K.246
- pi-Stacking: G:H.240, G:H.240
ACO.27: 23 residues within 4Å:- Chain G: K.14, D.17, I.21, M.32, A.35, G.62, N.63, N.64, D.67, K.90, D.94, F.129, G.130, T.131, G.132, L.133, R.134, G.135, E.136, Y.141, D.159, F.184, I.208
21 PLIP interactions:21 interactions with chain G- Hydrophobic interactions: G:I.21, G:N.63, G:N.64, G:D.159, G:F.184, G:I.208
- Hydrogen bonds: G:N.63, G:N.64, G:D.94, G:G.130, G:T.131, G:G.132, G:L.133, G:R.134, G:E.136, G:D.159
- Water bridges: G:G.62, G:G.62, G:K.90
- Salt bridges: G:K.14, G:K.90
ACO.28: 10 residues within 4Å:- Chain E: H.240, G.242, K.246
- Chain G: H.378, P.379, G.380, R.384, V.390, K.394, S.415
15 PLIP interactions:8 interactions with chain G, 7 interactions with chain E- Hydrogen bonds: G:G.380, G:S.415
- Water bridges: G:N.359, G:E.381, G:K.394, E:H.240, E:H.240
- Salt bridges: G:H.378, G:R.384, G:R.384, E:H.240, E:K.246, E:K.246
- pi-Stacking: E:H.240, E:H.240
ACO.31: 23 residues within 4Å:- Chain H: K.14, D.17, I.21, M.32, A.35, G.62, N.63, N.64, D.67, K.90, D.94, F.129, G.130, T.131, G.132, L.133, R.134, G.135, E.136, Y.141, D.159, F.184, I.208
21 PLIP interactions:21 interactions with chain H- Hydrophobic interactions: H:I.21, H:N.63, H:N.64, H:D.159, H:F.184, H:I.208
- Hydrogen bonds: H:N.63, H:N.64, H:D.94, H:G.130, H:T.131, H:G.132, H:L.133, H:R.134, H:E.136, H:D.159
- Water bridges: H:G.62, H:G.62, H:K.90
- Salt bridges: H:K.14, H:K.90
ACO.32: 10 residues within 4Å:- Chain F: H.240, G.242, K.246
- Chain H: H.378, P.379, G.380, R.384, V.390, K.394, S.415
15 PLIP interactions:8 interactions with chain H, 7 interactions with chain F- Hydrogen bonds: H:G.380, H:S.415
- Water bridges: H:N.359, H:E.381, H:K.394, F:H.240, F:H.240
- Salt bridges: H:H.378, H:R.384, H:R.384, F:H.240, F:K.246, F:K.246
- pi-Stacking: F:H.240, F:H.240
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Shumilin, I.A. et al., Identification of unknown protein function using metabolite cocktail screening. Structure (2012)
- Release Date
- 2011-06-22
- Peptides
- Putative uncharacterized protein: ABCDEFGH
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
AG
AH
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.95 Å
- Oligo State
- homo-octamer
- Ligands
- 8 x ALA- ALA- TRP- LEU- PHE- GLU- ALA: Unknown peptide, probably from expression host(Non-covalent)
- 8 x K: POTASSIUM ION(Non-covalent)
- 16 x ACO: ACETYL COENZYME *A(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Shumilin, I.A. et al., Identification of unknown protein function using metabolite cocktail screening. Structure (2012)
- Release Date
- 2011-06-22
- Peptides
- Putative uncharacterized protein: ABCDEFGH
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
AG
AH
A