- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.05 Å
- Oligo State
- homo-octamer
- Ligands
- 8 x ALA- TRP- LEU- PHE- GLU- ALA: Unknown peptide, probably from expression host(Non-covalent)
- 8 x K: POTASSIUM ION(Non-covalent)
K.2: 6 residues within 4Å:- Chain A: N.64, D.126, F.129, V.158, V.160, S.162
5 PLIP interactions:5 interactions with chain A- Metal complexes: A:D.126, A:F.129, A:V.158, A:V.160, A:S.162
K.6: 6 residues within 4Å:- Chain B: N.64, D.126, F.129, V.158, V.160, S.162
5 PLIP interactions:5 interactions with chain B- Metal complexes: B:D.126, B:F.129, B:V.158, B:V.160, B:S.162
K.10: 6 residues within 4Å:- Chain C: N.64, D.126, F.129, V.158, V.160, S.162
5 PLIP interactions:5 interactions with chain C- Metal complexes: C:D.126, C:F.129, C:V.158, C:V.160, C:S.162
K.14: 6 residues within 4Å:- Chain D: N.64, D.126, F.129, V.158, V.160, S.162
5 PLIP interactions:5 interactions with chain D- Metal complexes: D:D.126, D:F.129, D:V.158, D:V.160, D:S.162
K.18: 6 residues within 4Å:- Chain E: N.64, D.126, F.129, V.158, V.160, S.162
5 PLIP interactions:5 interactions with chain E- Metal complexes: E:D.126, E:F.129, E:V.158, E:V.160, E:S.162
K.22: 6 residues within 4Å:- Chain F: N.64, D.126, F.129, V.158, V.160, S.162
5 PLIP interactions:5 interactions with chain F- Metal complexes: F:D.126, F:F.129, F:V.158, F:V.160, F:S.162
K.26: 6 residues within 4Å:- Chain G: N.64, D.126, F.129, V.158, V.160, S.162
5 PLIP interactions:5 interactions with chain G- Metal complexes: G:D.126, G:F.129, G:V.158, G:V.160, G:S.162
K.30: 6 residues within 4Å:- Chain H: N.64, D.126, F.129, V.158, V.160, S.162
5 PLIP interactions:5 interactions with chain H- Metal complexes: H:D.126, H:F.129, H:V.158, H:V.160, H:S.162
- 8 x NAI: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE(Non-covalent)
NAI.3: 16 residues within 4Å:- Chain A: D.17, G.62, N.63, N.64, D.67, F.129, G.130, T.131, G.132, L.133, R.134, G.135, E.136, Y.141, D.159, F.184
17 PLIP interactions:17 interactions with chain A- Hydrogen bonds: A:N.63, A:N.64, A:N.64, A:G.130, A:T.131, A:T.131, A:G.132, A:L.133, A:R.134, A:E.136, A:D.159
- Water bridges: A:G.61, A:G.62, A:G.62, A:N.63, A:N.63, A:D.67
NAI.7: 16 residues within 4Å:- Chain B: D.17, G.62, N.63, N.64, D.67, F.129, G.130, T.131, G.132, L.133, R.134, G.135, E.136, Y.141, D.159, F.184
17 PLIP interactions:17 interactions with chain B- Hydrogen bonds: B:N.63, B:N.64, B:N.64, B:G.130, B:T.131, B:T.131, B:G.132, B:L.133, B:R.134, B:E.136, B:D.159
- Water bridges: B:G.61, B:G.62, B:G.62, B:N.63, B:N.63, B:D.67
NAI.11: 16 residues within 4Å:- Chain C: D.17, G.62, N.63, N.64, D.67, F.129, G.130, T.131, G.132, L.133, R.134, G.135, E.136, Y.141, D.159, F.184
17 PLIP interactions:17 interactions with chain C- Hydrogen bonds: C:N.63, C:N.64, C:N.64, C:G.130, C:T.131, C:T.131, C:G.132, C:L.133, C:R.134, C:E.136, C:D.159
- Water bridges: C:G.61, C:G.62, C:G.62, C:N.63, C:N.63, C:D.67
NAI.15: 16 residues within 4Å:- Chain D: D.17, G.62, N.63, N.64, D.67, F.129, G.130, T.131, G.132, L.133, R.134, G.135, E.136, Y.141, D.159, F.184
17 PLIP interactions:17 interactions with chain D- Hydrogen bonds: D:N.63, D:N.64, D:N.64, D:G.130, D:T.131, D:T.131, D:G.132, D:L.133, D:R.134, D:E.136, D:D.159
- Water bridges: D:G.61, D:G.62, D:G.62, D:N.63, D:N.63, D:D.67
NAI.19: 16 residues within 4Å:- Chain E: D.17, G.62, N.63, N.64, D.67, F.129, G.130, T.131, G.132, L.133, R.134, G.135, E.136, Y.141, D.159, F.184
19 PLIP interactions:19 interactions with chain E- Hydrogen bonds: E:N.63, E:N.64, E:N.64, E:D.67, E:G.130, E:T.131, E:T.131, E:G.132, E:L.133, E:R.134, E:E.136, E:D.159, E:D.159
- Water bridges: E:G.61, E:G.62, E:G.62, E:N.63, E:N.63, E:D.67
NAI.23: 16 residues within 4Å:- Chain F: D.17, G.62, N.63, N.64, D.67, F.129, G.130, T.131, G.132, L.133, R.134, G.135, E.136, Y.141, D.159, F.184
19 PLIP interactions:19 interactions with chain F- Hydrogen bonds: F:N.63, F:N.64, F:N.64, F:D.67, F:G.130, F:T.131, F:T.131, F:G.132, F:L.133, F:R.134, F:E.136, F:D.159, F:D.159
- Water bridges: F:G.61, F:G.62, F:G.62, F:N.63, F:N.63, F:D.67
NAI.27: 16 residues within 4Å:- Chain G: D.17, G.62, N.63, N.64, D.67, F.129, G.130, T.131, G.132, L.133, R.134, G.135, E.136, Y.141, D.159, F.184
19 PLIP interactions:19 interactions with chain G- Hydrogen bonds: G:N.63, G:N.64, G:N.64, G:D.67, G:G.130, G:T.131, G:T.131, G:G.132, G:L.133, G:R.134, G:E.136, G:D.159, G:D.159
- Water bridges: G:G.61, G:G.62, G:G.62, G:N.63, G:N.63, G:D.67
NAI.31: 16 residues within 4Å:- Chain H: D.17, G.62, N.63, N.64, D.67, F.129, G.130, T.131, G.132, L.133, R.134, G.135, E.136, Y.141, D.159, F.184
19 PLIP interactions:19 interactions with chain H- Hydrogen bonds: H:N.63, H:N.64, H:N.64, H:D.67, H:G.130, H:T.131, H:T.131, H:G.132, H:L.133, H:R.134, H:E.136, H:D.159, H:D.159
- Water bridges: H:G.61, H:G.62, H:G.62, H:N.63, H:N.63, H:D.67
- 8 x NAX: BETA-6-HYDROXY-1,4,5,6-TETRHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE(Non-covalent)
NAX.4: 24 residues within 4Å:- Chain A: Y.256, G.258, A.259, G.327, P.328, G.329, L.330, A.355, D.356, N.359, H.378, P.379, G.380, E.381, G.439, G.440, D.443
- Chain D: H.240, K.241, L.274, P.292, E.293, L.294, I.295
22 PLIP interactions:6 interactions with chain D, 16 interactions with chain A- Hydrophobic interactions: D:L.274, D:I.295
- Hydrogen bonds: D:K.241, D:P.292, A:G.258, A:A.259, A:G.329, A:L.330, A:D.356, A:D.356, A:N.359, A:N.359, A:G.380, A:G.440, A:D.443
- Salt bridges: D:K.241, A:H.378, A:H.378
- pi-Stacking: D:H.240, A:H.378
- Water bridges: A:D.354, A:D.354
NAX.8: 24 residues within 4Å:- Chain B: Y.256, G.258, A.259, G.327, P.328, G.329, L.330, A.355, D.356, N.359, H.378, P.379, G.380, E.381, G.439, G.440, D.443
- Chain C: H.240, K.241, L.274, P.292, E.293, L.294, I.295
22 PLIP interactions:16 interactions with chain B, 6 interactions with chain C- Hydrogen bonds: B:G.258, B:A.259, B:G.329, B:L.330, B:D.356, B:D.356, B:N.359, B:N.359, B:G.380, B:G.440, B:D.443, C:K.241, C:P.292
- Water bridges: B:D.354, B:D.354
- Salt bridges: B:H.378, B:H.378, C:K.241
- pi-Stacking: B:H.378, C:H.240
- Hydrophobic interactions: C:L.274, C:I.295
NAX.12: 24 residues within 4Å:- Chain A: H.240, K.241, L.274, P.292, E.293, L.294, I.295
- Chain C: Y.256, G.258, A.259, G.327, P.328, G.329, L.330, A.355, D.356, N.359, H.378, P.379, G.380, E.381, G.439, G.440, D.443
22 PLIP interactions:6 interactions with chain A, 16 interactions with chain C- Hydrophobic interactions: A:L.274, A:I.295
- Hydrogen bonds: A:K.241, A:P.292, C:G.258, C:A.259, C:G.329, C:L.330, C:D.356, C:D.356, C:N.359, C:N.359, C:G.380, C:G.440, C:D.443
- Salt bridges: A:K.241, C:H.378, C:H.378
- pi-Stacking: A:H.240, C:H.378
- Water bridges: C:D.354, C:D.354
NAX.16: 24 residues within 4Å:- Chain B: H.240, K.241, L.274, P.292, E.293, L.294, I.295
- Chain D: Y.256, G.258, A.259, G.327, P.328, G.329, L.330, A.355, D.356, N.359, H.378, P.379, G.380, E.381, G.439, G.440, D.443
22 PLIP interactions:16 interactions with chain D, 6 interactions with chain B- Hydrogen bonds: D:G.258, D:A.259, D:G.329, D:L.330, D:D.356, D:D.356, D:N.359, D:N.359, D:G.380, D:G.440, D:D.443, B:K.241, B:P.292
- Water bridges: D:D.354, D:D.354
- Salt bridges: D:H.378, D:H.378, B:K.241
- pi-Stacking: D:H.378, B:H.240
- Hydrophobic interactions: B:L.274, B:I.295
NAX.20: 24 residues within 4Å:- Chain E: Y.256, G.258, A.259, G.327, P.328, G.329, L.330, A.355, D.356, N.359, H.378, P.379, G.380, E.381, G.439, G.440, D.443
- Chain H: H.240, K.241, L.274, P.292, E.293, L.294, I.295
26 PLIP interactions:20 interactions with chain E, 6 interactions with chain H- Hydrogen bonds: E:G.258, E:A.259, E:G.329, E:L.330, E:D.356, E:D.356, E:N.359, E:N.359, E:H.378, E:G.380, E:E.381, E:G.440, E:D.443, H:K.241, H:P.292
- Water bridges: E:Y.256, E:Y.256, E:D.354, E:D.354
- Salt bridges: E:H.378, E:H.378, H:K.241
- pi-Stacking: E:H.378, H:H.240
- Hydrophobic interactions: H:L.274, H:I.295
NAX.24: 24 residues within 4Å:- Chain F: Y.256, G.258, A.259, G.327, P.328, G.329, L.330, A.355, D.356, N.359, H.378, P.379, G.380, E.381, G.439, G.440, D.443
- Chain G: H.240, K.241, L.274, P.292, E.293, L.294, I.295
26 PLIP interactions:20 interactions with chain F, 6 interactions with chain G- Hydrogen bonds: F:G.258, F:A.259, F:G.329, F:L.330, F:D.356, F:D.356, F:N.359, F:N.359, F:H.378, F:G.380, F:E.381, F:G.440, F:D.443, G:K.241, G:P.292
- Water bridges: F:Y.256, F:Y.256, F:D.354, F:D.354
- Salt bridges: F:H.378, F:H.378, G:K.241
- pi-Stacking: F:H.378, G:H.240
- Hydrophobic interactions: G:L.274, G:I.295
NAX.28: 24 residues within 4Å:- Chain E: H.240, K.241, L.274, P.292, E.293, L.294, I.295
- Chain G: Y.256, G.258, A.259, G.327, P.328, G.329, L.330, A.355, D.356, N.359, H.378, P.379, G.380, E.381, G.439, G.440, D.443
26 PLIP interactions:20 interactions with chain G, 6 interactions with chain E- Hydrogen bonds: G:G.258, G:A.259, G:G.329, G:L.330, G:D.356, G:D.356, G:N.359, G:N.359, G:H.378, G:G.380, G:E.381, G:G.440, G:D.443, E:K.241, E:P.292
- Water bridges: G:Y.256, G:Y.256, G:D.354, G:D.354
- Salt bridges: G:H.378, G:H.378, E:K.241
- pi-Stacking: G:H.378, E:H.240
- Hydrophobic interactions: E:L.274, E:I.295
NAX.32: 24 residues within 4Å:- Chain F: H.240, K.241, L.274, P.292, E.293, L.294, I.295
- Chain H: Y.256, G.258, A.259, G.327, P.328, G.329, L.330, A.355, D.356, N.359, H.378, P.379, G.380, E.381, G.439, G.440, D.443
26 PLIP interactions:20 interactions with chain H, 6 interactions with chain F- Hydrogen bonds: H:G.258, H:A.259, H:G.329, H:L.330, H:D.356, H:D.356, H:N.359, H:N.359, H:H.378, H:G.380, H:E.381, H:G.440, H:D.443, F:K.241, F:P.292
- Water bridges: H:Y.256, H:Y.256, H:D.354, H:D.354
- Salt bridges: H:H.378, H:H.378, F:K.241
- pi-Stacking: H:H.378, F:H.240
- Hydrophobic interactions: F:L.274, F:I.295
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Shumilin, I.A. et al., Identification of unknown protein function using metabolite cocktail screening. Structure (2012)
- Release Date
- 2011-06-22
- Peptides
- Putative uncharacterized protein: ABCDEFGH
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
AG
AH
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.05 Å
- Oligo State
- homo-octamer
- Ligands
- 8 x ALA- TRP- LEU- PHE- GLU- ALA: Unknown peptide, probably from expression host(Non-covalent)
- 8 x K: POTASSIUM ION(Non-covalent)
- 8 x NAI: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE(Non-covalent)
- 8 x NAX: BETA-6-HYDROXY-1,4,5,6-TETRHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Shumilin, I.A. et al., Identification of unknown protein function using metabolite cocktail screening. Structure (2012)
- Release Date
- 2011-06-22
- Peptides
- Putative uncharacterized protein: ABCDEFGH
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
AC
AD
AE
AF
AG
AH
A