- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- monomer
- Ligands
- 4 x CA: CALCIUM ION(Non-covalent)
- 3 x ZN: ZINC ION(Non-covalent)
ZN.5: 6 residues within 4Å:- Chain A: H.142, H.146, Y.157, E.166
- Ligands: ZN.6, BET.15
4 PLIP interactions:3 interactions with chain A, 1 Ligand-Water interactions- Metal complexes: A:H.142, A:H.146, A:E.166, H2O.2
ZN.6: 6 residues within 4Å:- Chain A: A.113, E.143, H.146
- Ligands: ZN.5, BET.14, BET.15
5 PLIP interactions:2 interactions with chain A, 2 Ligand-Water interactions, 1 Ligand-Ligand interactions- Metal complexes: A:E.143, A:E.143, H2O.2, H2O.6, BET.14
ZN.7: 5 residues within 4Å:- Chain A: K.239, H.250
- Ligands: CL.8, CL.9, BET.16
1 PLIP interactions:1 interactions with chain A- Metal complexes: A:H.250
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- 1 x NA: SODIUM ION(Non-functional Binders)
- 6 x BET: TRIMETHYL GLYCINE(Non-covalent)
BET.11: 2 residues within 4Å:- Chain A: I.1, Y.29
1 PLIP interactions:1 interactions with chain A- Water bridges: A:Y.29
BET.12: 4 residues within 4Å:- Chain A: V.7, N.19, N.21, R.35
3 PLIP interactions:3 interactions with chain A- Water bridges: A:N.21, A:N.21
- Salt bridges: A:R.35
BET.13: 1 residues within 4Å:- Chain A: R.269
2 PLIP interactions:2 interactions with chain A- Water bridges: A:R.269
- Salt bridges: A:R.269
BET.14: 6 residues within 4Å:- Chain A: F.114, W.115, E.143, H.146, Y.157
- Ligands: ZN.6
8 PLIP interactions:8 interactions with chain A- Hydrogen bonds: A:W.115, A:W.115
- Water bridges: A:N.112, A:N.112, A:Y.157
- Salt bridges: A:H.146
- pi-Cation interactions: A:H.146, A:Y.157
BET.15: 11 residues within 4Å:- Chain A: N.112, A.113, L.133, V.139, E.143, E.166, L.202, R.203, H.231
- Ligands: ZN.5, ZN.6
5 PLIP interactions:5 interactions with chain A- Water bridges: A:R.203
- Salt bridges: A:H.142, A:E.143, A:R.203, A:H.231
BET.16: 10 residues within 4Å:- Chain A: S.206, D.207, K.239, Y.242, L.243, G.248, T.249, H.250
- Ligands: ZN.7, CL.9
5 PLIP interactions:5 interactions with chain A- Water bridges: A:Y.242, A:G.247, A:T.249
- Salt bridges: A:K.239, A:H.250
- 1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Marshall, H. et al., The use of trimethylamine N-oxide as a primary precipitating agent and related methylamine osmolytes as cryoprotective agents for macromolecular crystallography. Acta Crystallogr.,Sect.D (2012)
- Release Date
- 2011-12-28
- Peptides
- Thermolysin: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
E
SMTL ID : 3t2j.1
Tetragonal thermolysin in the presence of betaine
Thermolysin
Related Entries With Identical Sequence
1fj3.1 | 1fjo.1 | 1fjq.1 | 1fjt.1 | 1fju.1 | 1fjv.1 | 1fjw.1 | 1gxw.1 | 1hyt.1 | 1l3f.1 | 1lna.1 | 1lnb.1 | 1lnc.1 | 1lnd.1 | 1lne.1 | 1lnf.1 | 1os0.1 | 1os0.2 | 1pe5.1 | 1pe7.1 | 1pe8.1 | 1qf0.1 | 1qf1.1 | 1qf2.1 | 1thl.1 | 1tli.1 | 1tlp.1 | 1tlx.1 | 1tmn.1 | 1z9g.1 more...less...1zdp.1 | 2a7g.1 | 2g4z.1 | 2tli.1 | 2tlx.1 | 2tmn.1 | 3eim.1 | 3f28.1 | 3f2p.1 | 3fcq.1 | 3for.1 | 3p7p.1 | 3p7q.1 | 3p7r.1 | 3p7s.1 | 3p7t.1 | 3p7u.1 | 3p7v.1 | 3p7w.1 | 3t2h.1 | 3t2i.1 | 3tli.1 | 3tmn.1 | 3zi6.1 | 4tli.1 | 4tln.1 | 4tmn.1 | 5hqd.1 | 5tli.1 | 5tln.1 | 5tmn.1 | 6fsm.1 | 6tli.1 | 6tmn.1 | 7tli.1 | 7tln.1 | 8tli.1 | 8tln.1