SMTL ID : 3ugr.1

AKR1C3 complex with indomethacin at pH 6.8

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

monomer

Ligands

1 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.1: 29 residues within 4Å: Chain A: G.22, T.23, Y.24, D.50, Y.55, K.84, H.117, S.166, N.167, Q.190, Y.216, S.217, A.218, L.219, G.220, S.221, Q.222, L.236, A.253, L.268, A.269, K.270, S.271, Y.272, N.273, R.276, Q.279, N.280 Ligands: IMN.2 26 PLIP interactions: 26 interactions with chain A Hydrogen bonds: A:T.23, A:Y.24, A:Y.24, A:D.50, A:D.50, A:S.166, A:N.167, A:Q.190, A:S.217, A:L.219, A:S.221, A:Q.222, A:Q.222, A:Q.222, A:K.270, A:S.271, A:Y.272, A:Q.279, A:N.280 Water bridges: A:A.218, A:A.218, A:Q.279 Salt bridges: A:K.270, A:R.276 pi-Stacking: A:Y.216 pi-Cation interactions: A:R.276

1 x IMN: INDOMETHACIN(Non-covalent)

IMN.2: 17 residues within 4Å: Chain A: Y.24, L.54, Y.55, W.86, H.117, S.118, E.192, Y.216, S.217, S.221, Q.222, W.227, Y.305, F.306, F.311 Ligands: NAP.1, DMS.3 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.54, A:W.86, A:Y.216, A:F.306, A:F.306 Hydrogen bonds: A:Q.222, A:F.306 Water bridges: A:S.221

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.3: 9 residues within 4Å: Chain A: S.118, P.119, M.120, N.167, Y.216, F.306, P.318, Y.319 Ligands: IMN.2 No protein-ligand interaction detected (PLIP)

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 7 residues within 4Å: Chain A: F.15, P.17, E.77, D.78, I.79, F.80, D.112 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.112 EDO.5: 4 residues within 4Å: Chain A: L.182, K.183, Y.184, K.185 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.185 Water bridges: A:N.11, A:N.11, A:K.185

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Flanagan, J.U. et al., Crystal structures of three classes of non-steroidal anti-inflammatory drugs in complex with aldo-keto reductase 1C3. Plos One (2012)

Release Date

2012-08-15

Peptides

Aldo-keto reductase family 1 member C3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Aldo-keto reductase family 1 member C3

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