SMTL ID : 4a0d.1

Structure of unliganded human PARG catalytic domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

monomer

Ligands

2 x DTV: (2S,3S)-1,4-DIMERCAPTOBUTANE-2,3-DIOL(Non-covalent)

DTV.1: 2 residues within 4Å: Chain A: C.158, N.161 No protein-ligand interaction detected (PLIP) DTV.2: 5 residues within 4Å: Chain A: P.261, C.266, K.268, Y.404, A.447 No protein-ligand interaction detected (PLIP)

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 8 residues within 4Å: Chain A: F.131, L.136, E.140, H.143, L.144, I.148, K.232, F.235 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:L.144

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 7 residues within 4Å: Chain A: Y.76, R.90, L.93, K.114, Y.115, N.116, V.117 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.115, A:V.117 Water bridges: A:A.118, A:A.118 SO4.5: 5 residues within 4Å: Chain A: R.90, Y.119, P.198, R.199, N.201 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:R.199, A:N.201, A:A.202 Water bridges: A:R.90, A:R.90, A:Y.119, A:R.199, A:N.201 Salt bridges: A:R.90 SO4.6: 2 residues within 4Å: Chain A: W.61, R.199 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:W.61 Salt bridges: A:R.199 SO4.7: 3 residues within 4Å: Chain A: K.205, S.206, E.207 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.206, A:E.207 Water bridges: A:R.199, A:R.199, A:Y.208

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tucker, J.A. et al., Structures of the Human Poly (Adp-Ribose) Glycohydrolase Catalytic Domain Confirm Catalytic Mechanism and Explain Inhibition by Adp-Hpd Derivatives. Plos One (2012)

Release Date

2012-10-17

Peptides

POLY(ADP-RIBOSE) GLYCOHYDROLASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

POLY(ADP-RIBOSE) GLYCOHYDROLASE

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