SMTL ID : 4ayb.1

RNAP at 3.2Ang

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-mer

Ligands

10 x ZN: ZINC ION(Non-covalent)

ZN.1: 6 residues within 4Å: Chain A: G.50, C.58, C.61, C.68, P.69, H.71 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.58, A:C.61, A:C.68, A:H.71 ZN.2: 6 residues within 4Å: Chain A: C.98, C.101, C.146, C.149, K.152, F.154 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.98, A:C.101, A:C.146, A:C.149 ZN.3: 4 residues within 4Å: Chain A: H.426, T.488, R.490 Chain C: E.80 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain C Metal complexes: A:H.426, C:E.80, C:E.80 ZN.4: 4 residues within 4Å: Chain A: H.237, K.238, D.241, S.287 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:H.237, A:D.241 ZN.6: 6 residues within 4Å: Chain B: C.1064, C.1067, C.1082, I.1084, H.1085, S.1089 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.1064, B:C.1067, B:C.1082, B:H.1085 ZN.7: 5 residues within 4Å: Chain B: I.524, G.527, H.570, N.572, E.622 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:H.570 ZN.8: 4 residues within 4Å: Chain B: R.694, H.696, F.757, H.997 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:H.696 ZN.9: 4 residues within 4Å: Chain C: R.331, R.344, V.349, H.353 2 PLIP interactions: 2 interactions with chain C Metal complexes: C:H.353, C:H.353 ZN.11: 6 residues within 4Å: Chain K: C.7, T.9, C.10, R.42, C.44, C.45 4 PLIP interactions: 4 interactions with chain K Metal complexes: K:C.7, K:C.10, K:C.44, K:C.45 ZN.12: 6 residues within 4Å: Chain L: C.9, W.10, T.12, C.26, Y.28, C.29 4 PLIP interactions: 4 interactions with chain L Metal complexes: L:C.9, L:T.12, L:C.26, L:C.29

1 x MG: MAGNESIUM ION(Non-covalent)

MG.5: 3 residues within 4Å: Chain A: D.456, D.458, D.460 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.456, A:D.456, A:D.458, A:D.458, A:D.460

1 x SF4: IRON/SULFUR CLUSTER(Non-covalent)

SF4.10: 13 residues within 4Å: Chain D: C.183, P.184, E.185, V.187, F.188, C.203, T.204, L.205, C.206, E.207, E.208, C.209, I.219 3 PLIP interactions: 3 interactions with chain D, Metal complexes: D:C.203, D:C.206, D:C.209

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wojtas, M.N. et al., Structural and Functional Analyses of the Interaction of Archaeal RNA Polymerase with DNA. Nucleic Acids Res. (2012)

Release Date

2012-08-08

Peptides

DNA-DIRECTED RNA POLYMERASE: A
DNA-DIRECTED RNA POLYMERASE: B
DNA-DIRECTED RNA POLYMERASE: C
DNA-DIRECTED RNA POLYMERASE: D
DNA-DIRECTED RNA POLYMERASE: E
DNA-DIRECTED RNA POLYMERASE: F
DNA-DIRECTED RNA POLYMERASE: G
DNA-DIRECTED RNA POLYMERASE: H
DNA-DIRECTED RNA POLYMERASE: I
DNA-DIRECTED RNA POLYMERASE: J
DNA-DIRECTED RNA POLYMERASE: K
DNA-DIRECTED RNA POLYMERASE: L
DNA-DIRECTED RNA POLYMERASE: M

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
K

J
L

K
N

L
P

M
Q

DNA-DIRECTED RNA POLYMERASE

DNA-DIRECTED RNA POLYMERASE

DNA-DIRECTED RNA POLYMERASE

DNA-DIRECTED RNA POLYMERASE

DNA-DIRECTED RNA POLYMERASE

DNA-DIRECTED RNA POLYMERASE

DNA-DIRECTED RNA POLYMERASE

DNA-DIRECTED RNA POLYMERASE

DNA-DIRECTED RNA POLYMERASE

DNA-DIRECTED RNA POLYMERASE

DNA-DIRECTED RNA POLYMERASE

DNA-DIRECTED RNA POLYMERASE

DNA-DIRECTED RNA POLYMERASE

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