SMTL ID : 9jgf.1 (1 other biounit)

Crystal structure of Human Serum Albumin (HSA) complexed with Ebselen

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x 9JT: N-phenyl-2-selanylbenzamide(Non-covalent)

9JT.1: 8 residues within 4Å: Chain A: Q.57, C.58, P.59, D.62, V.101, T.103, T.107, Y.108 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:P.59, A:D.62, A:V.101, A:T.107 Hydrogen bonds: A:D.62, A:T.103

10 x MYR: MYRISTIC ACID(Non-covalent)

MYR.2: 10 residues within 4Å: Chain A: R.233, A.234, A.237, V.240, D.348, L.351, L.371, A.374, E.378, V.506 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:V.240, A:L.351, A:A.374 Water bridges: A:S.504, A:S.504, A:S.504 MYR.3: 10 residues within 4Å: Chain A: R.242, L.243, R.246, L.262, H.266, R.281, I.288, S.311, I.314, A.315 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.243, A:L.262, A:I.288, A:I.314, A:A.315 Salt bridges: A:R.242 MYR.4: 12 residues within 4Å: Chain A: L.411, N.415, R.434, Y.435, V.439, L.447, V.450, L.477, R.509, F.512, S.513 Ligands: MYR.5 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:L.411, A:Y.435, A:Y.435, A:V.439, A:L.447, A:V.450, A:L.477, A:F.512 Hydrogen bonds: A:N.415, A:Y.435 Salt bridges: A:R.434 MYR.5: 14 residues within 4Å: Chain A: S.366, V.368, R.372, P.408, L.411, I.412, N.415, L.431, M.470, A.473, E.474, L.477, R.509 Ligands: MYR.4 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:P.408, A:L.411, A:I.412, A:L.431, A:A.473, A:E.474, A:L.477 Hydrogen bonds: A:S.366, A:S.366 Salt bridges: A:R.372, A:R.509 MYR.6: 8 residues within 4Å: Chain A: Y.425, K.426, F.531, K.549, V.571, M.572, F.575, S.603 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:Y.425, A:K.549, A:K.549, A:V.571, A:F.575, A:F.575, A:F.575 MYR.7: 9 residues within 4Å: Chain A: R.34, Y.174, P.176, L.275, A.278, R.281, A.282, L.307, S.311 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.275, A:A.278 Hydrogen bonds: A:Y.174, A:Y.174, A:S.311, A:S.311 Water bridges: A:H.312 Salt bridges: A:R.281 MYR.8: 8 residues within 4Å: Chain A: I.166, H.170, L.178, Y.185, R.210, G.213, K.214, R.221 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:R.210, A:K.214, A:K.214 Hydrogen bonds: A:G.213 Salt bridges: A:H.170 MYR.9: 5 residues within 4Å: Chain A: F.252, D.332, M.353, Y.356, E.357 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:F.252, A:E.357 Water bridges: A:E.251, A:Y.356 MYR.10: 5 residues within 4Å: Chain A: R.372, P.403, L.404, E.407, P.510 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.404, A:E.407, A:E.407, A:P.510 MYR.11: 11 residues within 4Å: Chain A: L.139, R.141, L.159, Y.162, L.163, I.166, A.182, Y.185, F.189, L.206, R.210 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:R.141, A:Y.162, A:Y.162, A:I.166, A:Y.185, A:Y.185, A:F.189, A:L.206, A:R.210

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Maji, S. et al., Crystal structure of Human Serum Albumin (HSA) complexed with Ebselen. To Be Published

Release Date

2025-09-10

Peptides

Albumin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Albumin

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