SMTL ID : 9jgf.2 (1 other biounit)

Crystal structure of Human Serum Albumin (HSA) complexed with Ebselen

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x 9JT: N-phenyl-2-selanylbenzamide(Covalent)

9JT.1: 9 residues within 4Å: Chain A: L.55, C.58, P.59, D.62, L.66, T.100, V.101, A.102, T.103 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:D.62, A:L.66, A:V.101, A:A.102, A:T.103

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 5 residues within 4Å: Chain A: M.322, R.361, H.362, P.363, D.364 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.362, A:D.364, A:D.364 PO4.3: 8 residues within 4Å: Chain A: S.226, K.229, F.230, C.501, T.502, E.503, L.505, R.508 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:C.501 Water bridges: A:R.508 Salt bridges: A:K.229

12 x MYR: MYRISTIC ACID(Non-covalent)

MYR.4: 12 residues within 4Å: Chain A: R.233, A.234, K.236, A.237, V.240, D.348, L.351, A.374, K.375, E.378, S.504, V.506 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:K.236, A:A.237, A:V.240, A:L.351, A:A.374 Hydrogen bonds: A:S.504 MYR.5: 6 residues within 4Å: Chain A: R.242, L.262, H.266, R.281, I.314, A.315 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.262, A:I.314 Hydrogen bonds: A:R.242 MYR.6: 11 residues within 4Å: Chain A: L.411, Q.414, N.415, R.434, Y.435, V.439, L.447, L.477, F.512, S.513 Ligands: MYR.7 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:L.411, A:Y.435, A:V.439, A:L.447, A:L.477, A:F.512 Hydrogen bonds: A:N.415, A:Y.435, A:Y.435 Water bridges: A:R.434, A:R.434 Salt bridges: A:R.434 MYR.7: 15 residues within 4Å: Chain A: S.366, V.368, R.372, P.408, L.411, I.412, N.415, L.431, Y.435, L.454, M.470, E.474, L.477, R.509 Ligands: MYR.6 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:V.368, A:P.408, A:L.411, A:L.411, A:N.415, A:L.431, A:E.474, A:L.477 Hydrogen bonds: A:S.366 Salt bridges: A:R.372, A:R.509 MYR.8: 11 residues within 4Å: Chain A: Y.425, N.429, F.533, K.549, V.571, M.572, D.573, F.575, A.576, L.599, S.603 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:K.549, A:V.571, A:F.575, A:F.575, A:F.575 Hydrogen bonds: A:S.603 MYR.9: 9 residues within 4Å: Chain A: R.34, V.47, V.70, L.93, Y.174, P.176, A.278, L.307, L.308 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:V.47, A:V.70, A:L.93, A:A.278, A:L.308 Hydrogen bonds: A:R.34 Water bridges: A:S.311 MYR.10: 9 residues within 4Å: Chain A: E.251, F.252, D.332, F.333, N.342, F.350, M.353, Y.356, E.357 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:F.252, A:D.332, A:F.333, A:N.342, A:F.350, A:E.357 Hydrogen bonds: A:F.252, A:Y.356 Water bridges: A:E.251, A:R.360 MYR.11: 10 residues within 4Å: Chain A: R.138, L.139, I.166, R.169, H.170, Y.185, R.210, G.213, K.214 Ligands: MYR.14 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:R.138, A:L.139, A:I.166, A:Y.185, A:R.210 MYR.12: 2 residues within 4Å: Chain A: P.403, E.407 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:P.403, A:E.407, A:E.407 MYR.13: 10 residues within 4Å: Chain A: R.496, C.500, C.511, A.514, L.515, E.516, V.517, D.518, E.519, T.520 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:A.514, A:L.515, A:E.516, A:E.516 MYR.14: 11 residues within 4Å: Chain A: L.139, R.141, Y.162, L.163, I.166, L.178, A.182, Y.185, F.189, R.210 Ligands: MYR.11 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:R.141, A:Y.162, A:Y.185, A:Y.185, A:Y.185, A:F.189, A:R.210 MYR.15: 4 residues within 4Å: Chain A: T.380, K.383, C.393, E.400 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:T.380, A:K.383 Salt bridges: A:K.383

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Maji, S. et al., Crystal structure of Human Serum Albumin (HSA) complexed with Ebselen. To Be Published

Release Date

2025-09-10

Peptides

Albumin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Albumin

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