SMTL ID : 4e91.2 (1 other biounit)

Crystal Structure of the N-Terminal Domain of HIV-1 Capsid in Complex With Inhibitor BD3

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x 0OE: 4-{2-[5-(3-chlorophenyl)-1H-pyrazol-4-yl]-1-[3-(1H-imidazol-1-yl)propyl]-1H-benzimidazol-5-yl}benzoic acid(Non-covalent)

0OE.1: 11 residues within 4Å: Chain A: W.80, H.84, M.96, E.98, W.117, H.120, P.122, I.124, P.125, I.129, R.132 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:W.80, A:W.80, A:E.98, A:P.122, A:I.124, A:I.124, A:I.129 Salt bridges: A:R.132 pi-Stacking: A:H.120 Halogen bonds: A:W.117

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lemke, C.T. et al., Distinct Effects of Two HIV-1 Capsid Assembly Inhibitor Families That Bind the Same Site within the N-Terminal Domain of the Viral CA Protein. J.Virol. (2012)

Release Date

2012-04-25

Peptides

Gag protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Gag protein

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