SMTL ID : 4e92.2 (2 other biounits)

Crystal Structure of the N-Terminal Domain of HIV-1 Capsid in Complex With Inhibitor BM4

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x 0OE: 4-{2-[5-(3-chlorophenyl)-1H-pyrazol-4-yl]-1-[3-(1H-imidazol-1-yl)propyl]-1H-benzimidazol-5-yl}benzoic acid(Non-covalent)

0OE.1: 11 residues within 4Å: Chain A: W.80, H.84, E.98, W.117, H.120, P.122, P.123, I.124, P.125, I.129, R.132 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:W.80, A:W.80, A:P.122, A:I.124, A:I.124, A:P.125, A:I.129 Salt bridges: A:R.132 pi-Stacking: A:H.120 Halogen bonds: A:W.117

1 x 0OG: 3-{5-[3-ethyl-5-(5-methylfuran-2-yl)-1H-pyrazol-1-yl]-1-[(6-oxo-1,6-dihydropyridin-3-yl)methyl]-1H-benzimidazol-2-yl}-4-hydroxybenzoic acid(Non-covalent)

0OG.2: 14 residues within 4Å: Chain A: V.27, A.31, F.32, S.33, V.36, V.59, H.62, A.65, M.66, L.69, L.138, I.141, V.142, Y.145 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:V.27, A:A.31, A:V.36, A:V.59, A:H.62, A:A.65, A:L.69, A:I.141, A:V.142 Hydrogen bonds: A:F.32, A:H.62, A:Y.145, A:Y.145 pi-Stacking: A:F.32, A:F.32, A:F.32 pi-Cation interactions: A:H.62

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lemke, C.T. et al., Distinct Effects of Two HIV-1 Capsid Assembly Inhibitor Families That Bind the Same Site within the N-Terminal Domain of the Viral CA Protein. J.Virol. (2012)

Release Date

2012-04-25

Peptides

Gag protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Gag protein

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