SMTL ID : 4nx4.1

Re-refinement of CAP-1 HIV-CA complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 3 residues within 4Å: Chain A: Q.50, T.110, L.111 Ligand excluded by PLIP

2 x ZN: ZINC ION(Non-covalent)

ZN.2: 2 residues within 4Å: Chain A: H.87, I.91 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.87, H2O.4 ZN.3: 1 residues within 4Å: Chain A: H.120 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.120

1 x JPR: 1-(3-chloro-4-methylphenyl)-3-{2-[({5-[(dimethylamino)methyl]-2-furyl}methyl)thio]ethyl}urea(Non-covalent)

JPR.4: 17 residues within 4Å: Chain A: W.23, V.24, V.27, E.28, A.31, F.32, V.36, N.57, T.58, V.59, G.60, G.61, H.62, A.65, L.69, L.138, I.141 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:V.27, A:A.31, A:F.32, A:A.65, A:L.138, A:I.141, A:I.141 Hydrogen bonds: A:G.61, A:G.61, A:H.62

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lang, P.T. et al., Protein structural ensembles are revealed by redefining X-ray electron density noise. Proc.Natl.Acad.Sci.USA (2014)

Release Date

2014-02-26

Peptides

Gag-Pol polyprotein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Gag-Pol polyprotein

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