SMTL ID : 4j93.1

Crystal Structure of the N-Terminal Domain of HIV-1 Capsid in Complex With Inhibitor BI-1

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.74 Å

Oligo State

monomer

Ligands

1 x 0OE: 4-{2-[5-(3-chlorophenyl)-1H-pyrazol-4-yl]-1-[3-(1H-imidazol-1-yl)propyl]-1H-benzimidazol-5-yl}benzoic acid(Non-covalent)

0OE.1: 11 residues within 4Å: Chain A: W.80, H.84, M.96, R.97, E.98, W.117, H.120, P.122, I.124, P.125, R.132 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:W.80, A:W.80, A:E.98, A:P.122, A:I.124, A:I.124 Salt bridges: A:R.132 pi-Stacking: A:H.120 Halogen bonds: A:W.117

1 x 1JR: (4S)-3-phenyl-4-(pyridin-3-yl)-4,5-dihydropyrrolo[3,4-c]pyrazol-6(2H)-one(Non-covalent)

1JR.2: 11 residues within 4Å: Chain A: N.53, L.56, N.57, M.66, K.70, I.73, N.74, A.105, G.106, T.107, Y.130 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:L.56, A:L.56, A:K.70, A:I.73, A:I.73 Hydrogen bonds: A:N.53, A:N.57, A:N.57, A:T.107 pi-Cation interactions: A:K.70

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lamorte, L. et al., Discovery of Novel Small-Molecule HIV-1 Replication Inhibitors That Stabilize Capsid Complexes. Antimicrob.Agents Chemother. (2013)

Release Date

2013-07-10

Peptides

Gag protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Gag protein

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