SMTL ID : 4f63.1

Crystal structure of Human Fibroblast Growth Factor Receptor 1 Kinase domain in complex with compound 1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.55 Å

Oligo State

homo-dimer

Ligands

2 x 0S7: 5-bromo-N~4~-(3-methyl-1H-pyrazol-5-yl)-N~2~-[2-(pyridin-3-yl)ethyl]pyrimidine-2,4-diamine(Non-covalent)

0S7.1: 12 residues within 4Å: Chain A: L.28, G.29, V.36, A.56, V.105, E.106, Y.107, A.108, S.109, G.111, L.174, D.185 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:V.36, A:A.56, A:V.105, A:L.174 Hydrogen bonds: A:G.29, A:A.108, A:A.108, A:A.108 Halogen bonds: A:S.109 0S7.4: 13 residues within 4Å: Chain B: L.28, A.56, V.105, E.106, Y.107, A.108, S.109, G.111, R.171, N.172, L.174, A.184, D.185 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:A.56, B:V.105, B:L.174 Hydrogen bonds: B:L.28, B:A.108, B:A.108, B:A.108 Halogen bonds: B:S.109

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 6 residues within 4Å: Chain A: E.75, M.79, A.184, D.185, F.186, G.187 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.75, A:D.185, A:G.187 EDO.3: 6 residues within 4Å: Chain A: W.228, Y.245, H.261, R.262, M.263, W.281 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:W.228, A:M.263 EDO.5: 6 residues within 4Å: Chain B: E.75, M.79, I.89, D.185, F.186, G.187 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:D.185, B:G.187 EDO.6: 7 residues within 4Å: Chain B: W.228, Y.245, L.257, H.261, R.262, M.263, W.281 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Y.245, B:M.263

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Norman, R.A. et al., Protein-Ligand Crystal Structures Can Guide the Design of Selective Inhibitors of the FGFR Tyrosine Kinase. J.Med.Chem. (2012)

Release Date

2012-06-06

Peptides

Fibroblast growth factor receptor 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Fibroblast growth factor receptor 1

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