SMTL ID : 4f64.1

Crystal structure of Human Fibroblast Growth Factor Receptor 1 Kinase domain in complex with compound 6

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

homo-dimer

Ligands

2 x 0S8: 5-bromo-N~4~-[3-(3-methoxypropyl)-1H-pyrazol-5-yl]-N~2~-[(3-methyl-1,2-oxazol-5-yl)methyl]pyrimidine-2,4-diamine(Non-covalent)

0S8.1: 13 residues within 4Å: Chain A: L.28, V.36, A.56, K.58, V.105, E.106, Y.107, A.108, S.109, G.111, R.171, L.174 Ligands: EDO.2 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:A.56, A:V.105 Hydrogen bonds: A:A.108, A:A.108, A:A.108 Halogen bonds: A:S.109 0S8.5: 16 residues within 4Å: Chain B: L.28, V.36, A.56, K.58, E.75, V.105, E.106, Y.107, A.108, S.109, G.111, R.171, N.172, L.174, D.185 Ligands: EDO.6 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:A.56, B:V.105 Hydrogen bonds: B:A.108, B:A.108, B:A.108 Halogen bonds: B:S.109

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 7 residues within 4Å: Chain A: E.75, M.79, A.184, D.185, F.186, G.187 Ligands: 0S8.1 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.75, A:D.185, A:G.187 EDO.3: 6 residues within 4Å: Chain A: W.228, Y.245, L.257, R.262, M.263, W.281 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:W.228, A:H.261, A:M.263 EDO.6: 8 residues within 4Å: Chain B: E.75, M.79, I.89, A.184, D.185, F.186, G.187 Ligands: 0S8.5 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:D.185, B:F.186, B:G.187 EDO.7: 6 residues within 4Å: Chain B: W.228, Y.245, H.261, R.262, M.263, W.281 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:W.228, B:Y.245, B:M.263

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 2 residues within 4Å: Chain A: G.83, K.84 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.84

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Norman, R.A. et al., Protein-Ligand Crystal Structures Can Guide the Design of Selective Inhibitors of the FGFR Tyrosine Kinase. J.Med.Chem. (2012)

Release Date

2012-06-06

Peptides

Fibroblast growth factor receptor 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Fibroblast growth factor receptor 1

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