SMTL ID : 4f65.1

Crystal structure of Human Fibroblast Growth Factor Receptor 1 Kinase domain in complex with compound 8

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.26 Å

Oligo State

homo-dimer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: R.14, W.15, E.16, L.44, L.92 Ligands: EDO.7 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.16 SO4.2: 2 residues within 4Å: Chain A: G.83, K.84 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.84 Water bridges: A:G.83 SO4.9: 6 residues within 4Å: Chain B: R.114, R.171, T.201, N.203, R.205, W.210 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:T.201 Water bridges: B:R.171, B:R.171 Salt bridges: B:R.114, B:R.171, B:R.205 SO4.10: 7 residues within 4Å: Chain B: S.141, V.145, F.238, N.268, C.269, T.270, L.273 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.268, B:T.270

10 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 2 residues within 4Å: Chain A: K.162, H.223 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.162, A:H.223 EDO.4: 6 residues within 4Å: Chain A: Q.118, R.121, R.205, G.241, G.242, S.243 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Q.118, A:R.121, A:R.121, A:R.205, A:S.243 EDO.5: 5 residues within 4Å: Chain A: A.159, H.223, T.290, F.291, K.292 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:F.291, A:K.292 Water bridges: A:H.223 EDO.6: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) EDO.7: 3 residues within 4Å: Chain A: R.14, W.15 Ligands: SO4.1 No protein-ligand interaction detected (PLIP) EDO.11: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) EDO.12: 4 residues within 4Å: Chain B: Q.118, N.203, R.205, S.243 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Q.118, B:R.205 EDO.13: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) EDO.14: 6 residues within 4Å: Chain B: P.10, I.73, M.76, E.77, K.80, T.96 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:T.96 EDO.15: 5 residues within 4Å: Chain A: K.200, G.247, V.248, P.249 Chain B: E.252 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.200, A:G.247, A:V.248

2 x 0S9: 5-bromo-N~2~-[(3-methyl-1,2-oxazol-5-yl)methyl]-N~4~-[3-(2-phenylethyl)-1H-pyrazol-5-yl]pyrimidine-2,4-diamine(Non-covalent)

0S9.8: 17 residues within 4Å: Chain A: L.28, G.29, E.30, G.31, V.36, A.56, K.58, E.75, V.105, E.106, Y.107, A.108, S.109, G.111, R.171, L.174, D.185 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:A.56, A:K.58, A:V.105, A:V.105, A:L.174 Hydrogen bonds: A:E.30, A:A.108, A:A.108, A:A.108 Water bridges: A:N.112 pi-Cation interactions: A:K.58 Halogen bonds: A:S.109 0S9.16: 20 residues within 4Å: Chain B: L.28, G.29, E.30, G.31, V.36, A.56, K.58, E.75, M.79, I.89, V.105, E.106, Y.107, A.108, S.109, G.111, R.171, L.174, A.184, F.186 14 PLIP interactions: 14 interactions with chain B Hydrophobic interactions: B:A.56, B:I.89, B:V.105, B:V.105, B:L.174, B:A.184, B:F.186 Hydrogen bonds: B:E.30, B:A.108, B:A.108, B:A.108 Water bridges: B:E.30 pi-Cation interactions: B:K.58 Halogen bonds: B:S.109

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Norman, R.A. et al., Protein-Ligand Crystal Structures Can Guide the Design of Selective Inhibitors of the FGFR Tyrosine Kinase. J.Med.Chem. (2012)

Release Date

2012-06-06

Peptides

Fibroblast growth factor receptor 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Fibroblast growth factor receptor 1

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