SMTL ID : 4fkp.1

Crystal structure of the cdk2 in complex with oxindole inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

1 x LS5: 3-{[4-([AMINO(IMINO)METHYL]AMINOSULFONYL)ANILINO]METHYLENE}-2-OXO-2,3-DIHYDRO-1H-INDOLE(Non-covalent)

LS5.1: 15 residues within 4Å: Chain A: I.11, V.19, A.32, V.65, F.81, E.82, F.83, L.84, H.85, Q.86, D.87, K.90, L.135, A.145, D.146 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:I.11, A:V.19, A:A.32, A:V.65, A:F.81, A:F.81, A:D.87, A:L.135, A:L.135, A:A.145 Hydrogen bonds: A:E.9, A:E.9, A:I.11, A:E.82, A:L.84, A:L.84, A:D.87, A:K.90 Water bridges: A:K.90

1 x NA: SODIUM ION(Non-functional Binders)

NA.2: 5 residues within 4Å: Chain A: L.59, N.60, V.65, K.66, L.67 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.56, A:L.67 Water bridges: A:N.60

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kang, Y.N. et al., Crystal structure of the cdk2 in complex with oxindole inhibitor. To be Published

Release Date

2013-05-08

Peptides

Cyclin-dependent kinase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cyclin-dependent kinase 2

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