SMTL ID : 4fkq.1

Crystal structure of the cdk2 in complex with oxindole inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

monomer

Ligands

1 x 42K: 4-[(2Z)-2-(7-oxidanylidene-3,6-dihydropyrrolo[3,2-e]benzotriazol-8-ylidene)hydrazinyl]benzenesulfonamide(Non-covalent)

42K.1: 16 residues within 4Å: Chain A: I.11, V.19, A.32, K.34, V.65, F.81, E.82, F.83, L.84, H.85, Q.86, D.87, K.90, L.135, A.145, D.146 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:I.11, A:V.65, A:F.81, A:F.81, A:D.87, A:L.135, A:L.135, A:A.145 Hydrogen bonds: A:K.34, A:E.82, A:L.84, A:L.84, A:D.87, A:D.146 Water bridges: A:I.11, A:K.90, A:K.90

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 3 residues within 4Å: Chain A: N.137, T.138, E.139 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:T.138 Water bridges: A:H.85, A:N.137, A:N.137, A:N.137, A:T.138

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kang, Y.N. et al., Crystal structure of the cdk2 in complex with oxindole inhibitor. To be Published

Release Date

2013-05-08

Peptides

Cyclin-dependent kinase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cyclin-dependent kinase 2

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