SMTL ID : 4fkr.1

Crystal structure of the cdk2 in complex with oxindole inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x 45K: (8Z)-8-{[(2,2-dioxido-1,3-dihydro-2-benzothiophen-5-yl)amino]methylidene}-6,8-dihydro-7H-[1,3]thiazolo[5,4-e]indol-7-one(Non-covalent)

45K.1: 15 residues within 4Å: Chain A: I.11, V.19, A.32, K.34, F.81, E.82, F.83, L.84, H.85, Q.86, D.87, K.90, L.135, A.145, D.146 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:F.81, A:F.81, A:F.83, A:L.135, A:A.145 Hydrogen bonds: A:K.34, A:E.82, A:L.84, A:L.84

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 5 residues within 4Å: Chain A: F.249, E.258, R.261, S.262, S.265 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.258 Water bridges: A:F.249

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kang, Y.N. et al., Crystal structure of the cdk2 in complex with oxindole inhibitor. To be Published

Release Date

2013-05-08

Peptides

Cyclin-dependent kinase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cyclin-dependent kinase 2

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