SMTL ID : 4fkv.1

Crystal structure of the cdk2 in complex with oxindole inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x 61K: (3Z)-N-[2-(1H-imidazol-4-yl)ethyl]-2-oxo-3-[2-(4-sulfamoylphenyl)hydrazinylidene]-2,3-dihydro-1H-indole-5-carboxamide(Non-covalent)

61K.1: 18 residues within 4Å: Chain A: I.11, G.12, E.13, G.14, V.19, A.32, K.34, V.65, F.81, E.82, F.83, L.84, H.85, Q.86, D.87, K.90, L.135, D.146 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:V.19, A:F.81, A:F.81, A:D.87, A:L.135, A:L.135 Hydrogen bonds: A:I.11, A:E.13, A:E.82, A:L.84, A:L.84, A:D.87, A:K.90 Water bridges: A:Q.86

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 5 residues within 4Å: Chain A: F.249, E.258, R.261, S.262, S.265 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:R.261, A:R.261, A:S.265, A:S.265 Water bridges: A:F.249, A:E.258, A:S.262

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kang, Y.N. et al., Crystal structure of the cdk2 in complex with oxindole inhibitor. To be Published

Release Date

2013-05-08

Peptides

Cyclin-dependent kinase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cyclin-dependent kinase 2

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