- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.04 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x YS4: [({4-[4-(propan-2-yloxy)phenyl]pyridin-2-yl}amino)methanediyl]bis(phosphonic acid)(Non-covalent)
- 2 x IPR: ISOPENTYL PYROPHOSPHATE(Non-covalent)
IPR.2: 12 residues within 4Å:- Chain A: G.78, K.79, R.82, Q.118, L.122, R.135, T.223, Y.226, F.261, Q.262, D.265
- Ligands: YS4.1
20 PLIP interactions:20 interactions with chain A- Hydrophobic interactions: A:L.122, A:T.223, A:F.261, A:D.265
- Hydrogen bonds: A:K.79, A:R.82, A:Q.118
- Water bridges: A:K.79, A:K.79, A:Y.80, A:Y.80, A:N.81, A:R.134, A:R.134, A:K.279, A:K.279
- Salt bridges: A:K.79, A:K.79, A:R.82, A:R.135
IPR.7: 12 residues within 4Å:- Chain B: G.78, K.79, R.82, Q.118, L.122, R.135, T.223, Y.226, F.261, Q.262, D.265
- Ligands: YS4.6
20 PLIP interactions:20 interactions with chain B- Hydrophobic interactions: B:L.122, B:T.223, B:F.261, B:D.265
- Hydrogen bonds: B:K.79, B:R.82, B:Q.118
- Water bridges: B:K.79, B:K.79, B:Y.80, B:Y.80, B:Y.80, B:R.134, B:R.134, B:K.279, B:K.279
- Salt bridges: B:K.79, B:K.79, B:R.82, B:R.135
- 6 x MG: MAGNESIUM ION(Non-covalent)
MG.3: 5 residues within 4Å:- Chain A: D.125, D.129, Q.193
- Ligands: YS4.1, MG.5
5 PLIP interactions:2 interactions with chain A, 3 Ligand-Water interactions- Metal complexes: A:D.125, A:D.129, H2O.1, H2O.1, H2O.1
MG.4: 2 residues within 4Å:- Chain A: D.265
- Ligands: YS4.1
4 PLIP interactions:1 interactions with chain A, 3 Ligand-Water interactions- Metal complexes: A:D.265, H2O.1, H2O.1, H2O.1
MG.5: 4 residues within 4Å:- Chain A: D.125, D.129
- Ligands: YS4.1, MG.3
4 PLIP interactions:2 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:D.125, A:D.129, H2O.1, H2O.3
MG.8: 5 residues within 4Å:- Chain B: D.125, D.129, Q.193
- Ligands: YS4.6, MG.10
5 PLIP interactions:2 interactions with chain B, 3 Ligand-Water interactions- Metal complexes: B:D.125, B:D.129, H2O.5, H2O.5, H2O.5
MG.9: 2 residues within 4Å:- Chain B: D.265
- Ligands: YS4.6
4 PLIP interactions:1 interactions with chain B, 3 Ligand-Water interactions- Metal complexes: B:D.265, H2O.5, H2O.5, H2O.5
MG.10: 4 residues within 4Å:- Chain B: D.125, D.129
- Ligands: YS4.6, MG.8
4 PLIP interactions:2 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:D.125, B:D.129, H2O.5, H2O.7
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Park, J. et al., Ternary complex structures of human farnesyl pyrophosphate synthase bound with a novel inhibitor and secondary ligands provide insights into the molecular details of the enzyme's active site closure. Bmc Struct.Biol. (2012)
- Release Date
- 2012-12-26
- Peptides
- Farnesyl pyrophosphate synthase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
FB
F
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.04 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x YS4: [({4-[4-(propan-2-yloxy)phenyl]pyridin-2-yl}amino)methanediyl]bis(phosphonic acid)(Non-covalent)
- 2 x IPR: ISOPENTYL PYROPHOSPHATE(Non-covalent)
- 6 x MG: MAGNESIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Park, J. et al., Ternary complex structures of human farnesyl pyrophosphate synthase bound with a novel inhibitor and secondary ligands provide insights into the molecular details of the enzyme's active site closure. Bmc Struct.Biol. (2012)
- Release Date
- 2012-12-26
- Peptides
- Farnesyl pyrophosphate synthase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
FB
F