SMTL ID : 5ja0.1

Crystal structure of human FPPS with allosterically bound FPP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-dimer

Ligands

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 5 residues within 4Å: Chain A: G.78, K.79, Q.118, R.135 Ligands: FPP.2 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:K.79, A:Q.118 Water bridges: A:K.79, A:Y.80, A:R.82, A:R.82, A:R.135 Salt bridges: A:K.79, A:R.135 PO4.3: 5 residues within 4Å: Chain B: G.78, K.79, Q.118, R.135 Ligands: FPP.4 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:K.79, B:Q.118 Water bridges: B:K.79, B:Y.80, B:R.82, B:R.82, B:R.135 Salt bridges: B:K.79, B:R.135

2 x FPP: FARNESYL DIPHOSPHATE(Non-covalent)

FPP.2: 18 residues within 4Å: Chain A: Y.32, K.79, N.81, R.82, L.84, T.85, V.88, E.92, Q.118, S.227, F.228, F.261, A.361, V.362, G.365, L.366, K.369 Ligands: PO4.1 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:Y.32, A:R.82, A:L.84, A:V.88, A:F.228, A:K.369 Hydrogen bonds: A:N.81, A:Q.118 Water bridges: A:K.79, A:N.81, A:Y.226, A:Y.226, A:S.227 Salt bridges: A:K.79, A:K.79, A:R.82, A:R.82 FPP.4: 18 residues within 4Å: Chain B: Y.32, K.79, N.81, R.82, L.84, T.85, V.88, E.92, Q.118, S.227, F.228, F.261, A.361, V.362, G.365, L.366, K.369 Ligands: PO4.3 17 PLIP interactions: 17 interactions with chain B Hydrophobic interactions: B:Y.32, B:R.82, B:L.84, B:V.88, B:F.228, B:K.369 Hydrogen bonds: B:N.81, B:Q.118 Water bridges: B:K.79, B:N.81, B:R.82, B:Y.226, B:S.227 Salt bridges: B:K.79, B:K.79, B:R.82, B:R.82

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Park, J. et al., Human farnesyl pyrophosphate synthase is allosterically inhibited by its own product. Nat Commun (2017)

Release Date

2017-01-25

Peptides

Farnesyl pyrophosphate synthase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
F

B
F

Farnesyl pyrophosphate synthase

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