- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x YS4: [({4-[4-(propan-2-yloxy)phenyl]pyridin-2-yl}amino)methanediyl]bis(phosphonic acid)(Non-covalent)
- 4 x PO4: PHOSPHATE ION(Non-functional Binders)
PO4.2: 6 residues within 4Å:- Chain A: G.78, K.79, R.82, Q.118, R.135
- Ligands: PO4.3
9 PLIP interactions:9 interactions with chain A- Hydrogen bonds: A:K.79, A:Y.80, A:Q.118
- Water bridges: A:R.82, A:R.82, A:R.82, A:E.115
- Salt bridges: A:R.82, A:R.135
PO4.3: 9 residues within 4Å:- Chain A: R.82, Q.118, L.122, R.134, F.261, D.265, K.279
- Ligands: YS4.1, PO4.2
12 PLIP interactions:12 interactions with chain A- Hydrogen bonds: A:Q.118, A:D.265
- Water bridges: A:R.82, A:R.134, A:R.134, A:Q.262, A:D.265, A:K.279, A:K.279
- Salt bridges: A:R.82, A:R.134, A:K.279
PO4.9: 6 residues within 4Å:- Chain B: G.78, K.79, R.82, Q.118, R.135
- Ligands: PO4.10
9 PLIP interactions:9 interactions with chain B- Hydrogen bonds: B:K.79, B:Y.80, B:Q.118
- Water bridges: B:R.82, B:R.82, B:R.82, B:E.115
- Salt bridges: B:R.82, B:R.135
PO4.10: 9 residues within 4Å:- Chain B: R.82, Q.118, L.122, R.134, F.261, D.265, K.279
- Ligands: YS4.8, PO4.9
12 PLIP interactions:12 interactions with chain B- Hydrogen bonds: B:Q.118, B:D.265
- Water bridges: B:R.82, B:R.134, B:R.134, B:Q.262, B:D.265, B:K.279, B:K.279
- Salt bridges: B:R.82, B:R.134, B:K.279
- 6 x MG: MAGNESIUM ION(Non-covalent)
MG.4: 4 residues within 4Å:- Chain A: D.125, D.129
- Ligands: YS4.1, MG.5
5 PLIP interactions:2 interactions with chain A, 3 Ligand-Water interactions- Metal complexes: A:D.125, A:D.129, H2O.1, H2O.1, H2O.2
MG.5: 4 residues within 4Å:- Chain A: D.125, D.129
- Ligands: YS4.1, MG.4
4 PLIP interactions:2 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: A:D.125, A:D.129, H2O.1, H2O.1
MG.6: 2 residues within 4Å:- Chain A: D.265
- Ligands: YS4.1
4 PLIP interactions:1 interactions with chain A, 3 Ligand-Water interactions- Metal complexes: A:D.265, H2O.1, H2O.1, H2O.1
MG.11: 4 residues within 4Å:- Chain B: D.125, D.129
- Ligands: YS4.8, MG.12
5 PLIP interactions:2 interactions with chain B, 3 Ligand-Water interactions- Metal complexes: B:D.125, B:D.129, H2O.7, H2O.7, H2O.8
MG.12: 4 residues within 4Å:- Chain B: D.125, D.129
- Ligands: YS4.8, MG.11
4 PLIP interactions:2 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: B:D.125, B:D.129, H2O.7, H2O.7
MG.13: 2 residues within 4Å:- Chain B: D.265
- Ligands: YS4.8
4 PLIP interactions:1 interactions with chain B, 3 Ligand-Water interactions- Metal complexes: B:D.265, H2O.6, H2O.7, H2O.7
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Park, J. et al., Structure of human farnesyl pyrophosphate synthase in complex with an aminopyridine bisphosphonate and two molecules of inorganic phosphate. Acta Crystallogr F Struct Biol Commun (2014)
- Release Date
- 2014-03-12
- Peptides
- Farnesyl pyrophosphate synthase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
FB
F
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.00 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x YS4: [({4-[4-(propan-2-yloxy)phenyl]pyridin-2-yl}amino)methanediyl]bis(phosphonic acid)(Non-covalent)
- 4 x PO4: PHOSPHATE ION(Non-functional Binders)
- 6 x MG: MAGNESIUM ION(Non-covalent)
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Park, J. et al., Structure of human farnesyl pyrophosphate synthase in complex with an aminopyridine bisphosphonate and two molecules of inorganic phosphate. Acta Crystallogr F Struct Biol Commun (2014)
- Release Date
- 2014-03-12
- Peptides
- Farnesyl pyrophosphate synthase: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
FB
F