SMTL ID : 4lph.1

Crystal structure of human FPPS in complex with CL03093

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 7 residues within 4Å: Chain A: G.78, K.79, Y.80, N.81, R.82, Q.118 Ligands: YL3.2 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:K.79, A:Y.80, A:N.81, A:N.81, A:Q.118 Water bridges: A:R.82, A:R.82, A:R.82, A:E.115 Salt bridges: A:R.82 PO4.3: 7 residues within 4Å: Chain B: G.78, K.79, Y.80, N.81, R.82, Q.118 Ligands: YL3.4 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:K.79, B:Y.80, B:N.81, B:N.81, B:Q.118 Water bridges: B:R.82, B:R.82, B:R.82, B:E.115 Salt bridges: B:R.82

2 x YL3: ({[6-(4-methylphenyl)thieno[2,3-d]pyrimidin-4-yl]amino}methyl)phosphonic acid(Non-covalent)

YL3.2: 8 residues within 4Å: Chain A: N.81, R.82, T.85, S.227, F.228, F.261, L.366 Ligands: PO4.1 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:N.81, A:R.82, A:F.228, A:F.261 YL3.4: 8 residues within 4Å: Chain B: N.81, R.82, T.85, S.227, F.228, F.261, L.366 Ligands: PO4.3 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:N.81, B:R.82, B:F.228, B:F.261

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

De Schutter, J.W. et al., Multistage screening reveals chameleon ligands of the human farnesyl pyrophosphate synthase: implications to drug discovery for neurodegenerative diseases. J.Med.Chem. (2014)

Release Date

2014-06-25

Peptides

Farnesyl pyrophosphate synthase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
F

B
F

Farnesyl pyrophosphate synthase

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