SMTL ID : 4hfg.1

CID of human RPRD1B

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: I.31, H.32, R.34, K.73 Chain B: R.106 8 PLIP interactions: 7 interactions with chain A, 1 interactions with chain B Water bridges: A:H.32, A:R.34, A:R.34, A:K.73 Salt bridges: A:H.32, A:R.34, A:K.73, B:R.106 SO4.2: 4 residues within 4Å: Chain A: R.72, K.73 Chain B: R.106, N.109 6 PLIP interactions: 4 interactions with chain A, 2 interactions with chain B Water bridges: A:K.73, A:K.73 Salt bridges: A:R.72, A:K.73, B:R.106 Hydrogen bonds: B:N.109 SO4.3: 4 residues within 4Å: Chain A: R.106, N.109 Chain B: R.72, K.73 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A Salt bridges: B:R.72, B:K.73, A:R.106 Hydrogen bonds: A:N.109 SO4.10: 5 residues within 4Å: Chain A: R.106 Chain B: I.31, H.32, R.34, K.73 6 PLIP interactions: 3 interactions with chain B, 3 interactions with chain A Salt bridges: B:H.32, B:R.34, B:K.73, A:R.106 Water bridges: A:R.106, A:R.106 SO4.11: 6 residues within 4Å: Chain A: S.17, S.22, V.23 Chain B: S.17, S.22, V.23 9 PLIP interactions: 6 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:S.17, A:S.17, A:S.17, A:V.23, B:S.17, B:V.23 Water bridges: A:Q.24, A:Q.24, B:Q.24 SO4.12: 1 residues within 4Å: Chain B: N.54 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.54

10 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.4: 2 residues within 4Å: Chain A: D.65, N.69 No protein-ligand interaction detected (PLIP) UNX.5: 2 residues within 4Å: Chain A: H.33, H.36 No protein-ligand interaction detected (PLIP) UNX.6: 3 residues within 4Å: Chain A: G.99, C.100, K.101 No protein-ligand interaction detected (PLIP) UNX.7: 4 residues within 4Å: Chain A: S.3, F.4 Chain B: H.33, H.36 No protein-ligand interaction detected (PLIP) UNX.8: 5 residues within 4Å: Chain A: N.64, Q.68, I.110, R.114 Chain B: N.69 No protein-ligand interaction detected (PLIP) UNX.9: 2 residues within 4Å: Chain A: G.38, P.39 No protein-ligand interaction detected (PLIP) UNX.13: 3 residues within 4Å: Chain B: R.49, H.91, R.94 No protein-ligand interaction detected (PLIP) UNX.14: 4 residues within 4Å: Chain A: H.33, H.36 Chain B: S.3, F.4 No protein-ligand interaction detected (PLIP) UNX.15: 2 residues within 4Å: Chain A: W.29 Chain B: K.12 No protein-ligand interaction detected (PLIP) UNX.16: 4 residues within 4Å: Chain B: S.70, G.74, E.76, F.77 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ni, Z. et al., CID of human RPRD1B. TO BE PUBLISHED

Release Date

2012-10-17

Peptides

Regulation of nuclear pre-mRNA domain-containing protein 1B: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Regulation of nuclear pre-mRNA domain-containing protein 1B

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