SMTL ID : 4q96.3 (2 other biounits)

CID of human RPRD1B in complex with an unmodified CTD peptide

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

hetero-oligomer

Ligands

23 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.1: 2 residues within 4Å: Chain A: P.75 Ligands: UNX.8 Ligand excluded by PLIP UNX.2: 3 residues within 4Å: Chain A: S.42, H.45, R.46 Ligand excluded by PLIP UNX.3: 1 residues within 4Å: Chain A: R.94 Ligand excluded by PLIP UNX.4: 3 residues within 4Å: Chain A: R.34, K.73 Ligands: UNX.7 Ligand excluded by PLIP UNX.5: 1 residues within 4Å: Chain A: S.19 Ligand excluded by PLIP UNX.6: 3 residues within 4Å: Chain A: E.113, R.114, S.115 Ligand excluded by PLIP UNX.7: 2 residues within 4Å: Chain A: H.32 Ligands: UNX.4 Ligand excluded by PLIP UNX.8: 3 residues within 4Å: Chain A: K.71 Ligands: UNX.1, UNX.9 Ligand excluded by PLIP UNX.9: 1 residues within 4Å: Ligands: UNX.8 Ligand excluded by PLIP UNX.11: 2 residues within 4Å: Chain D: N.54 Ligands: UNX.16 Ligand excluded by PLIP UNX.12: 2 residues within 4Å: Chain D: R.49, H.91 Ligand excluded by PLIP UNX.13: 2 residues within 4Å: Chain D: S.5, E.6 Ligand excluded by PLIP UNX.14: 2 residues within 4Å: Chain B: Q.20 Chain D: Q.20 Ligand excluded by PLIP UNX.15: 3 residues within 4Å: Chain D: E.47, K.50, A.51 Ligand excluded by PLIP UNX.16: 3 residues within 4Å: Chain D: N.54, T.58 Ligands: UNX.11 Ligand excluded by PLIP UNX.17: 2 residues within 4Å: Chain D: S.83, V.84 Ligand excluded by PLIP UNX.20: 1 residues within 4Å: Chain E: S.14 Ligand excluded by PLIP UNX.21: 2 residues within 4Å: Chain E: K.12, L.26 Ligand excluded by PLIP UNX.22: 3 residues within 4Å: Chain E: H.33, K.35, H.36 Ligand excluded by PLIP UNX.23: 3 residues within 4Å: Chain E: T.25, L.28, W.29 Ligand excluded by PLIP UNX.24: 2 residues within 4Å: Chain E: K.102, R.106 Ligand excluded by PLIP UNX.25: 5 residues within 4Å: Chain E: Q.24, S.27, L.28, D.65, N.69 Ligand excluded by PLIP UNX.27: 4 residues within 4Å: Chain B: R.106 Chain F: X.1, S.2, P.3 Ligand excluded by PLIP

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.10: 2 residues within 4Å: Chain B: K.102, R.106 2 PLIP interactions: 2 interactions with chain B Salt bridges: B:K.102, B:R.106 SO4.18: 5 residues within 4Å: Chain A: R.106 Chain D: S.17, S.19, H.21 Chain F: S.9 8 PLIP interactions: 4 interactions with chain D, 3 interactions with chain F, 1 interactions with chain A Hydrogen bonds: D:S.17, D:S.19, D:H.21, D:S.22, F:S.9 Water bridges: F:P.7, F:S.9 Salt bridges: A:R.106 SO4.19: 3 residues within 4Å: Chain D: F.4, H.33, H.36 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:F.4, D:F.4 Salt bridges: D:H.33, D:H.36 SO4.26: 3 residues within 4Å: Chain E: H.32, R.34, K.73 3 PLIP interactions: 3 interactions with chain E Salt bridges: E:H.32, E:R.34, E:K.73

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ni, Z. et al., RPRD1A and RPRD1B are human RNA polymerase II C-terminal domain scaffolds for Ser5 dephosphorylation. Nat.Struct.Mol.Biol. (2014)

Release Date

2014-06-04

Peptides

Regulation of nuclear pre-mRNA domain-containing protein 1B: ABDE
RPB1-CTD: CF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

D
D

E
E

C
C

F
F

Regulation of nuclear pre-mRNA domain-containing protein 1B

RPB1-CTD

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