SMTL ID : 4q94.1 (2 other biounits)

human RPRD1B CID in complex with a RPB1-CTD derived Ser2 phosphorylated peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

hetero-1-1-mer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: S.19, H.21, S.22 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.19 Water bridges: A:S.17, A:S.22 Salt bridges: A:H.21

9 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.2: 1 residues within 4Å: Chain A: S.53 No protein-ligand interaction detected (PLIP) UNX.3: 2 residues within 4Å: Chain A: V.116, Y.117 No protein-ligand interaction detected (PLIP) UNX.4: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) UNX.5: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) UNX.6: 3 residues within 4Å: Chain A: S.3, F.4, H.33 No protein-ligand interaction detected (PLIP) UNX.7: 2 residues within 4Å: Chain A: R.34, K.73 No protein-ligand interaction detected (PLIP) UNX.8: 1 residues within 4Å: Chain A: H.21 No protein-ligand interaction detected (PLIP) UNX.9: 1 residues within 4Å: Chain A: E.120 No protein-ligand interaction detected (PLIP) UNX.10: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ni, Z. et al., RPRD1A and RPRD1B are human RNA polymerase II C-terminal domain scaffolds for Ser5 dephosphorylation. Nat.Struct.Mol.Biol. (2014)

Release Date

2014-06-18

Peptides

Regulation of nuclear pre-mRNA domain-containing protein 1B: A
rpb1-ctd: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
D

Regulation of nuclear pre-mRNA domain-containing protein 1B

rpb1-ctd

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