SMTL ID : 4q96.1 (2 other biounits)

CID of human RPRD1B in complex with an unmodified CTD peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

homo-dimer

Ligands

13 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.1: 2 residues within 4Å: Chain A: N.54 Ligands: UNX.6 No protein-ligand interaction detected (PLIP) UNX.2: 2 residues within 4Å: Chain A: R.49, H.91 No protein-ligand interaction detected (PLIP) UNX.3: 2 residues within 4Å: Chain A: S.5, E.6 No protein-ligand interaction detected (PLIP) UNX.4: 1 residues within 4Å: Chain A: Q.20 No protein-ligand interaction detected (PLIP) UNX.5: 3 residues within 4Å: Chain A: E.47, K.50, A.51 No protein-ligand interaction detected (PLIP) UNX.6: 3 residues within 4Å: Chain A: N.54, T.58 Ligands: UNX.1 No protein-ligand interaction detected (PLIP) UNX.7: 2 residues within 4Å: Chain A: S.83, V.84 No protein-ligand interaction detected (PLIP) UNX.10: 1 residues within 4Å: Chain B: S.14 No protein-ligand interaction detected (PLIP) UNX.11: 2 residues within 4Å: Chain B: K.12, L.26 No protein-ligand interaction detected (PLIP) UNX.12: 3 residues within 4Å: Chain B: H.33, K.35, H.36 No protein-ligand interaction detected (PLIP) UNX.13: 3 residues within 4Å: Chain B: T.25, L.28, W.29 No protein-ligand interaction detected (PLIP) UNX.14: 2 residues within 4Å: Chain B: K.102, R.106 No protein-ligand interaction detected (PLIP) UNX.15: 5 residues within 4Å: Chain B: Q.24, S.27, L.28, D.65, N.69 No protein-ligand interaction detected (PLIP)

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.8: 3 residues within 4Å: Chain A: S.17, S.19, H.21 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.17, A:S.19, A:H.21, A:S.22 SO4.9: 3 residues within 4Å: Chain A: F.4, H.33, H.36 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:F.4, A:F.4 Salt bridges: A:H.33, A:H.36 SO4.16: 3 residues within 4Å: Chain B: H.32, R.34, K.73 3 PLIP interactions: 3 interactions with chain B Salt bridges: B:H.32, B:R.34, B:K.73

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ni, Z. et al., RPRD1A and RPRD1B are human RNA polymerase II C-terminal domain scaffolds for Ser5 dephosphorylation. Nat.Struct.Mol.Biol. (2014)

Release Date

2014-06-04

Peptides

Regulation of nuclear pre-mRNA domain-containing protein 1B: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
E

Regulation of nuclear pre-mRNA domain-containing protein 1B

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