- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- hetero-3-3-mer
- Ligands
- 45 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 3 x FE: FE (III) ION(Non-covalent)
FE.4: 5 residues within 4Å:- Chain A: N.201, H.208, H.213, D.362
- Ligands: IAC.5
4 PLIP interactions:4 interactions with chain A- Metal complexes: A:H.208, A:H.213, A:D.362, A:D.362
FE.27: 5 residues within 4Å:- Chain C: N.201, H.208, H.213, D.362
- Ligands: IAC.28
4 PLIP interactions:4 interactions with chain C- Metal complexes: C:H.208, C:H.213, C:D.362, C:D.362
FE.50: 5 residues within 4Å:- Chain E: N.201, H.208, H.213, D.362
- Ligands: IAC.51
4 PLIP interactions:4 interactions with chain E- Metal complexes: E:H.208, E:H.213, E:D.362, E:D.362
- 3 x IAC: 1H-INDOL-3-YLACETIC ACID(Non-covalent)
IAC.5: 14 residues within 4Å:- Chain A: N.201, F.202, D.205, H.208, V.209, H.213, F.224, L.253, H.295, N.297, L.307, F.352, D.362
- Ligands: FE.4
10 PLIP interactions:10 interactions with chain A- Hydrophobic interactions: A:F.202, A:V.209, A:F.224, A:L.253, A:L.307
- Hydrogen bonds: A:N.201, A:N.297
- Salt bridges: A:H.208, A:H.213
- pi-Stacking: A:H.208
IAC.28: 14 residues within 4Å:- Chain C: N.201, F.202, D.205, H.208, V.209, H.213, F.224, L.253, H.295, N.297, L.307, F.352, D.362
- Ligands: FE.27
10 PLIP interactions:10 interactions with chain C- Hydrophobic interactions: C:F.202, C:V.209, C:F.224, C:L.253, C:L.307
- Hydrogen bonds: C:N.201, C:N.297
- Salt bridges: C:H.208, C:H.213
- pi-Stacking: C:H.208
IAC.51: 14 residues within 4Å:- Chain E: N.201, F.202, D.205, H.208, V.209, H.213, F.224, L.253, H.295, N.297, L.307, F.352, D.362
- Ligands: FE.50
10 PLIP interactions:10 interactions with chain E- Hydrophobic interactions: E:F.202, E:V.209, E:F.224, E:L.253, E:L.307
- Hydrogen bonds: E:N.201, E:N.297
- Salt bridges: E:H.208, E:H.213
- pi-Stacking: E:H.208
- 15 x SO4: SULFATE ION(Non-functional Binders)
SO4.6: 2 residues within 4Å:- Chain A: K.245, W.439
3 PLIP interactions:3 interactions with chain A- Water bridges: A:Y.394, A:Y.394
- Salt bridges: A:K.245
SO4.7: 4 residues within 4Å:- Chain A: L.128, N.129, K.130, K.131
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:K.130, A:K.131
- Water bridges: A:K.130, A:K.130
- Salt bridges: A:K.130, A:K.131
SO4.15: 2 residues within 4Å:- Chain A: P.337, E.338
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:E.338
- Water bridges: A:M.336, A:E.338, A:D.339
SO4.17: 5 residues within 4Å:- Chain B: G.59, S.60, G.166, E.167, K.172
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:S.60, B:E.167
- Water bridges: B:E.61, B:K.172
- Salt bridges: B:K.172
SO4.23: 4 residues within 4Å:- Chain B: K.132, E.133, R.165, R.171
2 PLIP interactions:2 interactions with chain B- Salt bridges: B:R.165, B:R.171
SO4.29: 2 residues within 4Å:- Chain C: K.245, W.439
3 PLIP interactions:3 interactions with chain C- Water bridges: C:Y.394, C:Y.394
- Salt bridges: C:K.245
SO4.30: 4 residues within 4Å:- Chain C: L.128, N.129, K.130, K.131
6 PLIP interactions:6 interactions with chain C- Hydrogen bonds: C:K.130, C:K.131
- Water bridges: C:K.130, C:K.130
- Salt bridges: C:K.130, C:K.131
SO4.38: 2 residues within 4Å:- Chain C: P.337, E.338
4 PLIP interactions:4 interactions with chain C- Hydrogen bonds: C:E.338
- Water bridges: C:M.336, C:E.338, C:D.339
SO4.40: 5 residues within 4Å:- Chain D: G.59, S.60, G.166, E.167, K.172
5 PLIP interactions:5 interactions with chain D- Hydrogen bonds: D:S.60, D:E.167
- Water bridges: D:E.61, D:K.172
- Salt bridges: D:K.172
SO4.46: 4 residues within 4Å:- Chain D: K.132, E.133, R.165, R.171
2 PLIP interactions:2 interactions with chain D- Salt bridges: D:R.165, D:R.171
SO4.52: 2 residues within 4Å:- Chain E: K.245, W.439
3 PLIP interactions:3 interactions with chain E- Water bridges: E:Y.394, E:Y.394
- Salt bridges: E:K.245
SO4.53: 4 residues within 4Å:- Chain E: L.128, N.129, K.130, K.131
6 PLIP interactions:6 interactions with chain E- Hydrogen bonds: E:K.130, E:K.131
- Water bridges: E:K.130, E:K.130
- Salt bridges: E:K.130, E:K.131
SO4.61: 2 residues within 4Å:- Chain E: P.337, E.338
4 PLIP interactions:4 interactions with chain E- Hydrogen bonds: E:E.338
- Water bridges: E:M.336, E:E.338, E:D.339
SO4.63: 5 residues within 4Å:- Chain F: G.59, S.60, G.166, E.167, K.172
5 PLIP interactions:5 interactions with chain F- Hydrogen bonds: F:S.60, F:E.167
- Water bridges: F:E.61, F:K.172
- Salt bridges: F:K.172
SO4.69: 4 residues within 4Å:- Chain F: K.132, E.133, R.165, R.171
2 PLIP interactions:2 interactions with chain F- Salt bridges: F:R.165, F:R.171
- 3 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)
FES.8: 9 residues within 4Å:- Chain A: C.81, H.83, R.84, G.85, C.101, Y.103, H.104, G.105, W.106
4 PLIP interactions:4 interactions with chain A,- Metal complexes: A:C.81, A:H.83, A:C.101, A:H.104
FES.31: 9 residues within 4Å:- Chain C: C.81, H.83, R.84, G.85, C.101, Y.103, H.104, G.105, W.106
4 PLIP interactions:4 interactions with chain C,- Metal complexes: C:C.81, C:H.83, C:C.101, C:H.104
FES.54: 9 residues within 4Å:- Chain E: C.81, H.83, R.84, G.85, C.101, Y.103, H.104, G.105, W.106
4 PLIP interactions:4 interactions with chain E,- Metal complexes: E:C.81, E:H.83, E:C.101, E:H.104
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ferraro, D.J. et al., Naphthalene 1,2-Dioxygenase bound to indole-3-acetate. To be Published
- Release Date
- 2013-10-30
- Peptides
- Naphthalene 1,2-dioxygenase subunit alpha: ACE
Naphthalene 1,2-dioxygenase subunit beta: BDF - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
AE
AB
BD
BF
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- hetero-3-3-mer
- Ligands
- 45 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 3 x FE: FE (III) ION(Non-covalent)
- 3 x IAC: 1H-INDOL-3-YLACETIC ACID(Non-covalent)
- 15 x SO4: SULFATE ION(Non-functional Binders)
- 3 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Ferraro, D.J. et al., Naphthalene 1,2-Dioxygenase bound to indole-3-acetate. To be Published
- Release Date
- 2013-10-30
- Peptides
- Naphthalene 1,2-dioxygenase subunit alpha: ACE
Naphthalene 1,2-dioxygenase subunit beta: BDF - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AC
AE
AB
BD
BF
B