SMTL ID : 4m5d.1

Crystal structure of the Utp22 and Rrp7 complex from Saccharomyces cerevisiae

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.97 Å

Oligo State

hetero-1-1-mer

Ligands

11 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: K.192, Y.350, K.353, K.354 4 PLIP interactions: 4 interactions with chain A Water bridges: A:K.192 Salt bridges: A:K.192, A:K.353, A:K.354 SO4.2: 4 residues within 4Å: Chain A: S.376, S.377, G.389, T.390 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:S.377, A:S.377, A:T.390 Water bridges: A:S.377, A:T.390, A:T.390, A:F.391 SO4.3: 4 residues within 4Å: Chain A: G.374, S.384, L.385, E.584 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:L.385 Water bridges: A:G.383, A:G.383, A:S.384, A:M.585, A:K.616 SO4.4: 8 residues within 4Å: Chain A: L.574, G.575, D.576, R.577, K.626, V.628, T.629, K.630 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:L.574, A:D.576, A:D.576, A:R.577, A:K.630 Salt bridges: A:K.626 SO4.5: 3 residues within 4Å: Chain A: K.166, R.597, Y.600 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.600 Salt bridges: A:K.166, A:R.597 SO4.6: 3 residues within 4Å: Chain A: R.656, F.658, K.659 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.659 Salt bridges: A:R.656 SO4.7: 6 residues within 4Å: Chain A: H.923, R.1063, L.1067, P.1091, G.1092, L.1093 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.1092, A:L.1093 Water bridges: A:Y.1096 Salt bridges: A:H.923, A:R.1063 SO4.8: 3 residues within 4Å: Chain A: H.1194, K.1195, R.1197 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.1195 Salt bridges: A:H.1194, A:R.1197 SO4.9: 3 residues within 4Å: Chain A: R.822, E.1134, L.1136 2 PLIP interactions: 2 interactions with chain A Water bridges: A:E.1134 Salt bridges: A:R.822 SO4.10: 2 residues within 4Å: Chain A: I.861, R.865 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.865 SO4.11: 6 residues within 4Å: Chain A: R.92, E.96, K.423, K.427, L.496, N.500 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.96, A:N.500 Salt bridges: A:R.92, A:K.423, A:K.427

3 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.12: 8 residues within 4Å: Chain A: S.966, Q.967, W.968, N.969, W.970, K.971, T.1065, K.1069 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:W.970, A:K.971, A:K.1069 PGE.13: 4 residues within 4Å: Chain A: K.115, K.117, Q.118, K.119 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.118, A:K.119 PGE.14: 5 residues within 4Å: Chain A: Y.1152, F.1226 Chain B: L.61, F.93, F.171 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:Y.1152

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lin, J. et al., An RNA-Binding Complex Involved in Ribosome Biogenesis Contains a Protein with Homology to tRNA CCA-Adding Enzyme. Plos Biol. (2013)

Release Date

2013-11-06

Peptides

U3 small nucleolar RNA-associated protein 22: A
Ribosomal RNA-processing protein 7: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

U3 small nucleolar RNA-associated protein 22

Ribosomal RNA-processing protein 7

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