SMTL ID : 6zqa.1

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state A (Poly-Ala)

Coordinates
PDB Format
Method
ELECTRON MICROSCOPY
Oligo State
hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-2-1-1-2-1-1-1-1-1-1-1-2-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer
Ligands
2 x ZN: ZINC ION(Non-covalent)
2 x MG: MAGNESIUM ION(Non-functional Binders)(Non-covalent)
1 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Non-covalent)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Cheng, J. et al., 90 S pre-ribosome transformation into the primordial 40 S subunit. Science (2020)
Release Date
2020-09-23
Peptides
Periodic tryptophan protein 2: A
Nucleolar complex protein 14: B
Something about silencing protein 10: C
U3 small nucleolar RNA-associated protein 4: D
U3 small nucleolar RNA-associated protein 5: E
U3 small nucleolar RNA-associated protein 6: F
U3 small nucleolar RNA-associated protein 7: G
U3 small nucleolar RNA-associated protein 8: H
U3 small nucleolar RNA-associated protein 9: I
U3 small nucleolar RNA-associated protein 10: J
U3 small nucleolar RNA-associated protein 11: K
U3 small nucleolar RNA-associated protein 12: L
U3 small nucleolar RNA-associated protein 13: M
U3 small nucleolar RNA-associated protein 14: N
U3 small nucleolar RNA-associated protein 15: O
Bud site selection protein 21: P
NET1-associated nuclear protein 1: Q
U3 small nucleolar RNA-associated protein 18: R
Nucleolar complex protein 4: S
U3 small nucleolar RNA-associated protein 21: T
U3 small nucleolar RNA-associated protein 22: U
rRNA-processing protein FCF1: V
Ribosome biogenesis protein UTP30: W
rRNA 2'-O-methyltransferase fibrillarin: XY
Nucleolar protein 56: Z
Nucleolar protein 58: 0
13 kDa ribonucleoprotein-associated protein: 12
Ribosomal RNA-processing protein 9: 3
U3 small nucleolar ribonucleoprotein protein IMP3: 4
U3 small nucleolar ribonucleoprotein protein IMP4: 5
U3 small nucleolar RNA-associated protein MPP10: 6
Ribosome biogenesis protein BMS1: 7
RNA 3'-terminal phosphate cyclase-like protein: 8
Ribosomal RNA-processing protein 7: 9
Ribosomal RNA small subunit methyltransferase NEP1: ab
Essential nuclear protein 1: c
Pre-rRNA-processing protein PNO1: d
rRNA-processing protein FCF2: e
Protein FAF1: f
KRR1 small subunit processome component: g
Protein SOF1: h
Regulator of rDNA transcription protein 14: i
40S ribosomal protein S1-A: j
Rps5p: k
40S ribosomal protein S7-A: l
40S ribosomal protein S9-A: m
40S ribosomal protein S13: n
40S ribosomal protein S14-A: o
40S ribosomal protein S16-A: p
40S ribosomal protein S18-A: q
40S ribosomal protein S22-A: r
40S ribosomal protein S23-A: s
40S ribosomal protein S27-A: t
40S ribosomal protein S28-A: u
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
UA
B
UB
C
UC
D
UD
E
UE
F
UF
G
UG
H
UH
I
UI
J
UJ
K
UK
L
UL
M
UM
N
UN
O
UO
P
UP
Q
UQ
R
UR
S
US
T
UU
U
UV
V
UX
W
UZ
X
CA
Y
CB
Z
CD
0
CE
1
CF
2
CG
3
CH
4
CI
5
CJ
6
CK
7
CL
8
CM
9
CN
a
JF
b
JG
c
JH
d
JJ
e
JM
f
JN
g
JO
h
JP
i
JQ
j
DA
k
DF
l
DH
m
DJ
n
DN
o
DO
p
DQ
q
DS
r
DW
s
DX
t
Db
u
Dc

Periodic tryptophan protein 2

Nucleolar complex protein 14

Something about silencing protein 10

U3 small nucleolar RNA-associated protein 4

U3 small nucleolar RNA-associated protein 5

U3 small nucleolar RNA-associated protein 6

U3 small nucleolar RNA-associated protein 7

U3 small nucleolar RNA-associated protein 8

U3 small nucleolar RNA-associated protein 9

U3 small nucleolar RNA-associated protein 10

U3 small nucleolar RNA-associated protein 11

U3 small nucleolar RNA-associated protein 12

U3 small nucleolar RNA-associated protein 13

U3 small nucleolar RNA-associated protein 14

U3 small nucleolar RNA-associated protein 15

Bud site selection protein 21

NET1-associated nuclear protein 1

U3 small nucleolar RNA-associated protein 18

Nucleolar complex protein 4

U3 small nucleolar RNA-associated protein 21

U3 small nucleolar RNA-associated protein 22

rRNA-processing protein FCF1

Ribosome biogenesis protein UTP30

rRNA 2'-O-methyltransferase fibrillarin

Nucleolar protein 56

Nucleolar protein 58

13 kDa ribonucleoprotein-associated protein

Ribosomal RNA-processing protein 9

U3 small nucleolar ribonucleoprotein protein IMP3

U3 small nucleolar ribonucleoprotein protein IMP4

U3 small nucleolar RNA-associated protein MPP10

Ribosome biogenesis protein BMS1

RNA 3'-terminal phosphate cyclase-like protein

Ribosomal RNA-processing protein 7

Ribosomal RNA small subunit methyltransferase NEP1

Essential nuclear protein 1

Pre-rRNA-processing protein PNO1

rRNA-processing protein FCF2

Protein FAF1

KRR1 small subunit processome component

Protein SOF1

Regulator of rDNA transcription protein 14

40S ribosomal protein S1-A

Rps5p

40S ribosomal protein S7-A

40S ribosomal protein S9-A

40S ribosomal protein S13

40S ribosomal protein S14-A

40S ribosomal protein S16-A

40S ribosomal protein S18-A

40S ribosomal protein S22-A

40S ribosomal protein S23-A

40S ribosomal protein S27-A

40S ribosomal protein S28-A

Related Entries With Identical Sequence

1zwz.1 | 1zwz.2 | 3j6x.44 | 3j6x.48 | 3j6x.50 | 3j6x.52 | 3j6x.56 | 3j6x.57 | 3j6x.59 | 3j6x.61 | 3j6x.65 | 3j6x.66 | 3j6x.70 | 3j6x.71 | 3j6y.44 | 3j6y.48 | 3j6y.50 | 3j6y.52 | 3j6y.56 | 3j6y.57 | 3j6y.59 | 3j6y.61 | 3j6y.65 | 3j6y.66 | 3j6y.70 | 3j6y.71 | 3j77.47 | 3j77.51 | 3j77.53 | 3j77.55  more...