SMTL ID : 6zqf.1

Cryo-EM structure of the 90S pre-ribosome from Saccharomyces cerevisiae, state Dis-B (Poly-Ala)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-2-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 3 residues within 4Å: Chain e: C.37, T.61, I.62 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cheng, J. et al., 90 S pre-ribosome transformation into the primordial 40 S subunit. Science (2020)

Release Date

2020-09-23

Peptides

Periodic tryptophan protein 2: A
Nucleolar complex protein 14: B
Something about silencing protein 10: C
U3 small nucleolar RNA-associated protein 12: D
U3 small nucleolar RNA-associated protein 13: E
Nucleolar complex protein 4: F
U3 small nucleolar RNA-associated protein 21: G
U3 small nucleolar RNA-associated protein 22: H
U3 small nucleolar ribonucleoprotein protein IMP3: I
U3 small nucleolar ribonucleoprotein protein IMP4: J
U3 small nucleolar RNA-associated protein MPP10: K
Ribosome biogenesis protein BMS1: L
RNA 3'-terminal phosphate cyclase-like protein: M
Ribosomal RNA-processing protein 7: N
Probable ATP-dependent RNA helicase DHR1: O
Ribosomal RNA small subunit methyltransferase NEP1: PQ
Essential nuclear protein 1: R
Dimethyladenosine transferase: S
Pre-rRNA-processing protein PNO1: T
Rps5p: U
40S ribosomal protein S16-A: V
40S ribosomal protein S18-A: W
40S ribosomal protein S19-A: X
40S ribosomal protein S28-A: Y
40S ribosomal protein S1-A: 1
40S ribosomal protein S4-A: 2
40S ribosomal protein S6-A: 3
40S ribosomal protein S7-A: 4
40S ribosomal protein S8-A: 5
40S ribosomal protein S9-A: 6
40S ribosomal protein S11-A: 7
40S ribosomal protein S13: 8
40S ribosomal protein S14-A: 9
40S ribosomal protein S25-A: a
40S ribosomal protein S22-A: b
40S ribosomal protein S23-A: c
40S ribosomal protein S24-A: d
40S ribosomal protein S27-A: e

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
UA

B
UB

C
UC

D
UL

E
UM

F
US

G
UU

H
UV

I
CI

J
CJ

K
CK

L
CL

M
CM

N
CN

O
JD

P
JF

Q
JG

R
JH

S
JL

T
JJ

U
DF

V
DQ

W
DS

X
DT

Y
Dc

1
DA

2
DE

3
DG

4
DH

5
DI

6
DJ

7
DL

8
DN

9
DO

a
DZ

b
DW

c
DX

d
DY

e
Db

Periodic tryptophan protein 2

Nucleolar complex protein 14

Something about silencing protein 10

U3 small nucleolar RNA-associated protein 12

U3 small nucleolar RNA-associated protein 13

Nucleolar complex protein 4

U3 small nucleolar RNA-associated protein 21

U3 small nucleolar RNA-associated protein 22

U3 small nucleolar ribonucleoprotein protein IMP3

U3 small nucleolar ribonucleoprotein protein IMP4

U3 small nucleolar RNA-associated protein MPP10

Ribosome biogenesis protein BMS1

RNA 3'-terminal phosphate cyclase-like protein

Ribosomal RNA-processing protein 7

Probable ATP-dependent RNA helicase DHR1

Ribosomal RNA small subunit methyltransferase NEP1

Essential nuclear protein 1

Dimethyladenosine transferase

Pre-rRNA-processing protein PNO1

Rps5p

40S ribosomal protein S16-A

40S ribosomal protein S18-A

40S ribosomal protein S19-A

40S ribosomal protein S28-A

40S ribosomal protein S1-A

40S ribosomal protein S4-A

40S ribosomal protein S6-A

40S ribosomal protein S7-A

40S ribosomal protein S8-A

40S ribosomal protein S9-A

40S ribosomal protein S11-A

40S ribosomal protein S13

40S ribosomal protein S14-A

40S ribosomal protein S25-A

40S ribosomal protein S22-A

40S ribosomal protein S23-A

40S ribosomal protein S24-A

40S ribosomal protein S27-A

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