SMTL ID : 7d5s.1

Cryo-EM structure of 90S preribosome with inactive Utp24 (state A2)

Coordinates
PDB Format
Method
ELECTRON MICROSCOPY
Oligo State
hetero-1-1-1-1-1-1-1-1-1-2-1-1-1-2-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-2-1-1-1-1-1-1-1-1-1-1-mer
Ligands
1 x ZN: ZINC ION(Non-covalent)
1 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Non-covalent)
1 x MG: MAGNESIUM ION(Non-covalent)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Ye, K., Cryo-EM structure of 90S preribosome with inactive Utp24 (state A2). To Be Published
Release Date
2021-10-06
Peptides
40S ribosomal protein S5: D
40S ribosomal protein S9-A: E
40S ribosomal protein S12: F
40S ribosomal protein S13: G
40S ribosomal protein S14-A: H
40S ribosomal protein S16-A: I
40S ribosomal protein S18-A: J
40S ribosomal protein S23-A: K
40S ribosomal protein S28-A: L
rRNA 2'-O-methyltransferase fibrillarin: MN
Nucleolar protein 56: O
Nucleolar protein 58: P
Ribosomal RNA-processing protein 9: Q
13 kDa ribonucleoprotein-associated protein: RS
U3 small nucleolar RNA-associated protein 4: T
U3 small nucleolar RNA-associated protein 5: U
U3 small nucleolar RNA-associated protein 8: V
U3 small nucleolar RNA-associated protein 9: W
U3 small nucleolar RNA-associated protein 10: X
U3 small nucleolar RNA-associated protein 15: Y
NET1-associated nuclear protein 1: Z
Periodic tryptophan protein 2: 0
U3 small nucleolar RNA-associated protein 12: 1
U3 small nucleolar RNA-associated protein 13: 2
U3 small nucleolar RNA-associated protein 18: 3
U3 small nucleolar RNA-associated protein 21: 4
U3 small nucleolar RNA-associated protein 6: 5
Bud site selection protein 21: 6
U3 small nucleolar RNA-associated protein 7: 7
U3 small nucleolar RNA-associated protein 11: 8
U3 small nucleolar RNA-associated protein MPP10: 9
U3 small nucleolar ribonucleoprotein protein IMP3: a
U3 small nucleolar ribonucleoprotein protein IMP4: b
Something about silencing protein 10: c
Protein SOF1: d
rRNA-processing protein FCF2: e
rRNA-processing protein FCF1: f
KRR1 small subunit processome component: g
rRNA biogenesis protein RRP5: h
U3 small nucleolar RNA-associated protein 22: i
Ribosomal RNA-processing protein 7: j
Ribosomal RNA small subunit methyltransferase NEP1: kl
Ribosome biogenesis protein UTP30: m
Ribosome biogenesis protein BMS1: n
RNA 3'-terminal phosphate cyclase-like protein: o
Nucleolar complex protein 14: p
Nucleolar complex protein 4: q
U3 small nucleolar RNA-associated protein 14: r
Essential nuclear protein 1: s
Pno1: t
Regulator of rDNA transcription protein 14: u
Unassigned peptides 1: v
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
D
SG
E
SK
F
SN
G
SO
H
SP
I
SR
J
ST
K
SY
L
Sd
M
3B
N
3C
O
3D
P
3E
Q
3F
R
3G
S
3H
T
A4
U
A5
V
A8
W
A9
X
AE
Y
AF
Z
AG
0
B1
1
B2
2
B3
3
B8
4
BE
5
B6
6
5B
7
5C
8
5D
9
5E
a
5F
b
5G
c
5H
d
5I
e
5J
f
5K
g
RC
h
RD
i
RE
j
RF
k
RG
l
RH
m
RI
n
RJ
o
RK
p
RN
q
RO
r
RQ
s
RS
t
RT
u
RW
v
X1

40S ribosomal protein S5

40S ribosomal protein S9-A

40S ribosomal protein S12

40S ribosomal protein S13

40S ribosomal protein S14-A

40S ribosomal protein S16-A

40S ribosomal protein S18-A

40S ribosomal protein S23-A

40S ribosomal protein S28-A

rRNA 2'-O-methyltransferase fibrillarin

Nucleolar protein 56

Nucleolar protein 58

Ribosomal RNA-processing protein 9

13 kDa ribonucleoprotein-associated protein

Toggle Identical (RS)

U3 small nucleolar RNA-associated protein 4

U3 small nucleolar RNA-associated protein 5

U3 small nucleolar RNA-associated protein 8

U3 small nucleolar RNA-associated protein 9

U3 small nucleolar RNA-associated protein 10

U3 small nucleolar RNA-associated protein 15

NET1-associated nuclear protein 1

Periodic tryptophan protein 2

U3 small nucleolar RNA-associated protein 12

U3 small nucleolar RNA-associated protein 13

U3 small nucleolar RNA-associated protein 18

U3 small nucleolar RNA-associated protein 21

U3 small nucleolar RNA-associated protein 6

Bud site selection protein 21

U3 small nucleolar RNA-associated protein 7

U3 small nucleolar RNA-associated protein 11

U3 small nucleolar RNA-associated protein MPP10

U3 small nucleolar ribonucleoprotein protein IMP3

U3 small nucleolar ribonucleoprotein protein IMP4

Something about silencing protein 10

Protein SOF1

rRNA-processing protein FCF2

rRNA-processing protein FCF1

KRR1 small subunit processome component

rRNA biogenesis protein RRP5

U3 small nucleolar RNA-associated protein 22

Ribosomal RNA-processing protein 7

Ribosomal RNA small subunit methyltransferase NEP1

Ribosome biogenesis protein UTP30

Ribosome biogenesis protein BMS1

RNA 3'-terminal phosphate cyclase-like protein

Nucleolar complex protein 14

Nucleolar complex protein 4

U3 small nucleolar RNA-associated protein 14

Essential nuclear protein 1

Pno1

Regulator of rDNA transcription protein 14

Unassigned peptides 1

Related Entries With Identical Sequence

1zwz.1 | 1zwz.2 | 3j6x.48 | 3j6x.52 | 3j6x.55 | 3j6x.56 | 3j6x.57 | 3j6x.59 | 3j6x.61 | 3j6x.66 | 3j6x.71 | 3j6y.48 | 3j6y.52 | 3j6y.55 | 3j6y.56 | 3j6y.57 | 3j6y.59 | 3j6y.61 | 3j6y.66 | 3j6y.71 | 3j77.51 | 3j77.55 | 3j77.58 | 3j77.59 | 3j77.60 | 3j77.62 | 3j77.64 | 3j77.69 | 3j77.74 | 3j78.51  more...