- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.50 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x IMP: INOSINIC ACID(Non-covalent)
- 4 x C91: N-(naphthalen-2-yl)-2-[2-(pyridin-2-yl)-1H-benzimidazol-1-yl]acetamide(Non-covalent)
C91.2: 13 residues within 4Å:- Chain A: S.166, A.167, H.168, T.224, G.306, M.311, E.332
- Chain D: V.46, P.48, S.357, G.360, Y.361
- Ligands: IMP.1
5 PLIP interactions:2 interactions with chain D, 3 interactions with chain A- Hydrophobic interactions: D:P.48, D:Y.361, A:H.168
- Hydrogen bonds: A:E.332
- Water bridges: A:A.167
C91.9: 12 residues within 4Å:- Chain A: L.47, P.48, S.357, G.360, Y.361
- Chain B: A.167, T.224, M.305, G.306, M.311, E.332
- Ligands: IMP.8
5 PLIP interactions:3 interactions with chain A, 2 interactions with chain B- Hydrophobic interactions: A:L.47, A:P.48, A:Y.361
- Hydrogen bonds: B:E.332, B:E.332
C91.13: 13 residues within 4Å:- Chain B: V.46, P.48, S.357, G.360, Y.361
- Chain C: S.166, A.167, H.168, T.224, G.306, M.311, E.332
- Ligands: IMP.12
5 PLIP interactions:3 interactions with chain C, 2 interactions with chain B- Hydrophobic interactions: C:H.168, B:P.48, B:Y.361
- Hydrogen bonds: C:E.332
- Water bridges: C:A.167
C91.20: 12 residues within 4Å:- Chain C: L.47, P.48, S.357, G.360, Y.361
- Chain D: A.167, T.224, M.305, G.306, M.311, E.332
- Ligands: IMP.19
4 PLIP interactions:3 interactions with chain C, 1 interactions with chain D- Hydrophobic interactions: C:L.47, C:P.48, C:Y.361
- Hydrogen bonds: D:E.332
- 6 x SO4: SULFATE ION(Non-functional Binders)
SO4.3: 4 residues within 4Å:- Chain A: R.297, Y.299, R.337
- Chain D: T.393
5 PLIP interactions:3 interactions with chain A, 2 interactions with chain D- Hydrogen bonds: A:R.297, A:Y.299, D:T.393, D:T.393
- Salt bridges: A:R.337
SO4.7: 3 residues within 4Å:- Chain A: S.343, R.345, S.346
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:S.343, A:S.343
- Water bridges: A:S.346
- Salt bridges: A:R.345
SO4.10: 3 residues within 4Å:- Chain A: T.393
- Chain B: Y.299, R.337
5 PLIP interactions:3 interactions with chain B, 2 interactions with chain A- Hydrogen bonds: B:Y.299, A:T.393, A:T.393
- Water bridges: B:R.297
- Salt bridges: B:R.337
SO4.14: 4 residues within 4Å:- Chain B: T.393
- Chain C: R.297, Y.299, R.337
5 PLIP interactions:4 interactions with chain C, 1 interactions with chain B- Hydrogen bonds: C:R.297, C:Y.299, C:Y.299, B:T.393
- Salt bridges: C:R.337
SO4.18: 3 residues within 4Å:- Chain C: S.343, R.345, S.346
4 PLIP interactions:4 interactions with chain C- Hydrogen bonds: C:S.343, C:S.343
- Water bridges: C:S.346
- Salt bridges: C:R.345
SO4.21: 3 residues within 4Å:- Chain C: T.393
- Chain D: Y.299, R.337
3 PLIP interactions:2 interactions with chain D, 1 interactions with chain C- Water bridges: D:R.297
- Salt bridges: D:R.337
- Hydrogen bonds: C:T.393
- 6 x CL: CHLORIDE ION(Non-functional Binders)
CL.4: 2 residues within 4Å:- Chain A: R.104, R.108
Ligand excluded by PLIPCL.5: 1 residues within 4Å:- Chain A: R.86
Ligand excluded by PLIPCL.6: 4 residues within 4Å:- Chain A: T.381
- Chain B: T.381
- Chain C: T.381
- Ligands: CL.17
Ligand excluded by PLIPCL.15: 2 residues within 4Å:- Chain C: R.104, R.108
Ligand excluded by PLIPCL.16: 1 residues within 4Å:- Chain C: R.86
Ligand excluded by PLIPCL.17: 4 residues within 4Å:- Chain A: T.381
- Chain C: T.381
- Chain D: T.381
- Ligands: CL.6
Ligand excluded by PLIP- 2 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kim, Y. et al., Crystal Structure of the Inosine 5'-monophosphate Dehydrogenase, with a Internal Deletion of CBS Domain from Campylobacter jejuni complexed with inhibitor compound C91. To be Published
- Release Date
- 2014-07-16
- Peptides
- Inosine-5'-monophosphate dehydrogenase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CB
DC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.50 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x IMP: INOSINIC ACID(Non-covalent)
- 4 x C91: N-(naphthalen-2-yl)-2-[2-(pyridin-2-yl)-1H-benzimidazol-1-yl]acetamide(Non-covalent)
- 6 x SO4: SULFATE ION(Non-functional Binders)
- 6 x CL: CHLORIDE ION(Non-functional Binders)
- 2 x GOL: GLYCEROL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kim, Y. et al., Crystal Structure of the Inosine 5'-monophosphate Dehydrogenase, with a Internal Deletion of CBS Domain from Campylobacter jejuni complexed with inhibitor compound C91. To be Published
- Release Date
- 2014-07-16
- Peptides
- Inosine-5'-monophosphate dehydrogenase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CB
DC
CD
D