SMTL ID : 5uqg.2 (1 other biounit)

Crystal Structure of the Catalytic Domain of the Inosine Monophosphate Dehydrogenase from Campylobacter jejuni in the complex with inhibitor p200

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.03 Å

Oligo State

homo-tetramer

Ligands

4 x IMP: INOSINIC ACID(Non-covalent)

IMP.1: 23 residues within 4Å: Chain A: A.70, M.72, N.194, G.219, S.220, I.221, C.222, T.224, D.255, G.256, G.257, M.276, I.277, G.278, S.279, Y.302, G.304, M.305, G.306, S.307, E.332, G.333 Ligands: 8L4.2 19 PLIP interactions: 19 interactions with chain A Hydrogen bonds: A:N.194, A:S.220, A:D.255, A:G.257, A:G.278, A:S.279, A:S.279, A:M.305, A:G.306, A:E.332 Water bridges: A:G.217, A:G.219, A:T.224, A:G.256, A:I.258, A:I.258, A:S.279, A:S.279, A:L.280 IMP.4: 23 residues within 4Å: Chain B: A.70, M.72, N.194, G.219, S.220, I.221, C.222, T.224, D.255, G.256, G.257, M.276, I.277, G.278, S.279, Y.302, G.304, M.305, G.306, S.307, E.332, G.333 Ligands: 8L4.5 20 PLIP interactions: 20 interactions with chain B Hydrogen bonds: B:N.194, B:S.220, B:D.255, B:G.257, B:G.278, B:S.279, B:S.279, B:M.305, B:G.306, B:S.307, B:E.332 Water bridges: B:G.217, B:G.219, B:T.224, B:I.258, B:I.258, B:I.258, B:I.258, B:S.279, B:L.280 IMP.8: 23 residues within 4Å: Chain C: A.70, M.72, N.194, G.219, S.220, I.221, C.222, T.224, D.255, G.256, G.257, M.276, I.277, G.278, S.279, Y.302, G.304, M.305, G.306, S.307, E.332, G.333 Ligands: 8L4.9 19 PLIP interactions: 19 interactions with chain C Hydrogen bonds: C:N.194, C:D.255, C:G.257, C:G.278, C:S.279, C:S.279, C:Y.302, C:M.305, C:G.306, C:E.332 Water bridges: C:G.217, C:G.219, C:T.224, C:I.258, C:I.258, C:I.258, C:S.279, C:S.279, C:L.280 IMP.13: 23 residues within 4Å: Chain D: A.70, M.72, N.194, G.219, S.220, I.221, C.222, T.224, D.255, G.256, G.257, M.276, I.277, G.278, S.279, Y.302, G.304, M.305, G.306, S.307, E.332, G.333 Ligands: 8L4.10 18 PLIP interactions: 18 interactions with chain D Hydrogen bonds: D:N.194, D:S.220, D:D.255, D:G.257, D:G.278, D:S.279, D:S.279, D:Y.302, D:M.305, D:G.306, D:E.332 Water bridges: D:G.217, D:G.219, D:T.224, D:I.258, D:I.258, D:S.279, D:S.279

4 x 8L4: 3-(2-{[(4-chlorophenyl)carbamoyl]amino}propan-2-yl)-N-hydroxybenzene-1-carboximidamide(Non-covalent)

8L4.2: 14 residues within 4Å: Chain A: A.167, H.168, T.224, M.305, G.306, M.311, V.330, E.332 Chain D: V.46, P.48, S.357, G.360, Y.361 Ligands: IMP.1 13 PLIP interactions: 9 interactions with chain A, 4 interactions with chain D Hydrophobic interactions: A:A.167, D:P.48, D:Y.361 Hydrogen bonds: A:T.224, A:E.332, A:E.332, A:E.332, D:Y.361 Water bridges: A:A.167, A:T.224, A:T.224, A:E.332, D:S.357 8L4.5: 14 residues within 4Å: Chain A: V.46, P.48, S.357, G.360, Y.361 Chain B: A.167, H.168, T.224, M.305, G.306, M.311, V.330, E.332 Ligands: IMP.4 13 PLIP interactions: 4 interactions with chain A, 9 interactions with chain B Hydrophobic interactions: A:P.48, A:Y.361, B:A.167 Hydrogen bonds: A:Y.361, B:T.224, B:E.332, B:E.332, B:E.332, B:E.332 Halogen bonds: A:V.46 Water bridges: B:G.215, B:T.224, B:T.224 8L4.9: 15 residues within 4Å: Chain B: S.44, V.46, P.48, S.357, G.360, Y.361 Chain C: A.167, H.168, T.224, M.305, G.306, M.311, V.330, E.332 Ligands: IMP.8 15 PLIP interactions: 10 interactions with chain C, 5 interactions with chain B Hydrophobic interactions: C:A.167, B:P.48, B:Y.361 Hydrogen bonds: C:T.224, C:E.332, C:E.332, C:E.332, C:E.332 Water bridges: C:A.167, C:G.215, C:T.224, C:T.224, B:S.357, B:S.357 Halogen bonds: B:S.44 8L4.10: 14 residues within 4Å: Chain C: V.46, P.48, S.357, G.360, Y.361 Chain D: A.167, H.168, T.224, M.305, G.306, M.311, V.330, E.332 Ligands: IMP.13 13 PLIP interactions: 7 interactions with chain D, 6 interactions with chain C Hydrophobic interactions: D:A.167, C:P.48, C:Y.361, C:Y.361 Hydrogen bonds: D:T.224, D:E.332, D:E.332, D:E.332, C:Y.361 Water bridges: D:A.167, D:T.224, C:S.357, C:S.357

4 x K: POTASSIUM ION(Non-covalent)

K.3: 7 residues within 4Å: Chain A: E.386, S.387, H.388 Chain B: G.217, P.218, G.219, C.222 5 PLIP interactions: 3 interactions with chain B, 2 interactions with chain A Metal complexes: B:G.217, B:G.219, B:C.222, A:E.386, A:S.387 K.7: 7 residues within 4Å: Chain B: E.386, S.387, H.388 Chain C: G.217, P.218, G.219, C.222 5 PLIP interactions: 3 interactions with chain C, 2 interactions with chain B Metal complexes: C:G.217, C:G.219, C:C.222, B:E.386, B:S.387 K.11: 6 residues within 4Å: Chain C: E.386, S.387, H.388 Chain D: G.217, G.219, C.222 5 PLIP interactions: 2 interactions with chain C, 3 interactions with chain D Metal complexes: C:E.386, C:S.387, D:G.217, D:G.219, D:C.222 K.12: 7 residues within 4Å: Chain A: G.217, P.218, G.219, C.222 Chain D: E.386, S.387, H.388 5 PLIP interactions: 3 interactions with chain A, 2 interactions with chain D Metal complexes: A:G.217, A:G.219, A:C.222, D:E.386, D:S.387

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.6: 7 residues within 4Å: Chain B: R.40, P.41, G.42, V.362, R.373, A.374, E.375 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.40, B:E.375

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, Y. et al., Crystal Structure of the Catalytic Domain of the Inosine Monophosphate Dehydrogenase from Campylobacter jejuni in the complex with inhibitor p200. To Be Published

Release Date

2017-03-01

Peptides

Inosine-5'-monophosphate dehydrogenase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
E

C
F

D
G

Inosine-5'-monophosphate dehydrogenase

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