- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.73 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x IMP: INOSINIC ACID(Non-covalent)
- 4 x 8KY: {2-chloro-5-[({2-[3-(prop-1-en-2-yl)phenyl]propan-2-yl}carbamoyl)amino]phenoxy}acetic acid(Non-covalent)
8KY.2: 14 residues within 4Å:- Chain A: S.166, A.167, H.168, T.224, M.305, G.306, M.311, V.330, E.332
- Chain D: P.48, S.357, G.360, Y.361
- Ligands: IMP.1
6 PLIP interactions:2 interactions with chain D, 4 interactions with chain A- Hydrophobic interactions: D:P.48, D:Y.361, A:A.167, A:E.332
- Hydrogen bonds: A:E.332, A:E.332
8KY.13: 14 residues within 4Å:- Chain B: S.166, A.167, H.168, T.224, M.305, G.306, M.311, V.330, E.332
- Chain C: P.48, S.357, G.360, Y.361
- Ligands: IMP.12
6 PLIP interactions:2 interactions with chain C, 4 interactions with chain B- Hydrophobic interactions: C:P.48, C:Y.361, B:A.167, B:E.332
- Hydrogen bonds: B:E.332, B:E.332
8KY.24: 14 residues within 4Å:- Chain A: P.48, S.357, G.360, Y.361
- Chain C: S.166, A.167, H.168, T.224, M.305, G.306, M.311, V.330, E.332
- Ligands: IMP.23
6 PLIP interactions:2 interactions with chain A, 4 interactions with chain C- Hydrophobic interactions: A:P.48, A:Y.361, C:A.167, C:E.332
- Hydrogen bonds: C:E.332, C:E.332
8KY.35: 14 residues within 4Å:- Chain B: P.48, S.357, G.360, Y.361
- Chain D: S.166, A.167, H.168, T.224, M.305, G.306, M.311, V.330, E.332
- Ligands: IMP.34
6 PLIP interactions:2 interactions with chain B, 4 interactions with chain D- Hydrophobic interactions: B:P.48, B:Y.361, D:A.167, D:E.332
- Hydrogen bonds: D:E.332, D:E.332
- 4 x K: POTASSIUM ION(Non-covalent)
K.3: 6 residues within 4Å:- Chain A: G.217, G.219, C.222
- Chain D: E.386, S.387, H.388
5 PLIP interactions:3 interactions with chain A, 2 interactions with chain D- Metal complexes: A:G.217, A:G.219, A:C.222, D:E.386, D:S.387
K.14: 6 residues within 4Å:- Chain B: G.217, G.219, C.222
- Chain C: E.386, S.387, H.388
5 PLIP interactions:2 interactions with chain C, 3 interactions with chain B- Metal complexes: C:E.386, C:S.387, B:G.217, B:G.219, B:C.222
K.25: 6 residues within 4Å:- Chain A: E.386, S.387, H.388
- Chain C: G.217, G.219, C.222
5 PLIP interactions:3 interactions with chain C, 2 interactions with chain A- Metal complexes: C:G.217, C:G.219, C:C.222, A:E.386, A:S.387
K.36: 6 residues within 4Å:- Chain B: E.386, S.387, H.388
- Chain D: G.217, G.219, C.222
5 PLIP interactions:3 interactions with chain D, 2 interactions with chain B- Metal complexes: D:G.217, D:G.219, D:C.222, B:E.386, B:S.387
- 20 x SO4: SULFATE ION(Non-functional Binders)
SO4.4: 3 residues within 4Å:- Chain A: I.99, Q.147, R.150
Ligand excluded by PLIPSO4.5: 2 residues within 4Å:- Chain A: Y.294, Q.295
Ligand excluded by PLIPSO4.6: 4 residues within 4Å:- Chain A: R.297, Y.299, R.337
- Chain D: T.393
Ligand excluded by PLIPSO4.7: 2 residues within 4Å:- Chain A: H.78, R.79
Ligand excluded by PLIPSO4.8: 6 residues within 4Å:- Chain A: K.56, N.246, G.249, V.250, P.251, S.273
Ligand excluded by PLIPSO4.15: 3 residues within 4Å:- Chain B: I.99, Q.147, R.150
Ligand excluded by PLIPSO4.16: 2 residues within 4Å:- Chain B: Y.294, Q.295
Ligand excluded by PLIPSO4.17: 4 residues within 4Å:- Chain B: R.297, Y.299, R.337
- Chain C: T.393
Ligand excluded by PLIPSO4.18: 2 residues within 4Å:- Chain B: H.78, R.79
Ligand excluded by PLIPSO4.19: 6 residues within 4Å:- Chain B: K.56, N.246, G.249, V.250, P.251, S.273
Ligand excluded by PLIPSO4.26: 3 residues within 4Å:- Chain C: I.99, Q.147, R.150
Ligand excluded by PLIPSO4.27: 2 residues within 4Å:- Chain C: Y.294, Q.295
Ligand excluded by PLIPSO4.28: 4 residues within 4Å:- Chain A: T.393
- Chain C: R.297, Y.299, R.337
Ligand excluded by PLIPSO4.29: 2 residues within 4Å:- Chain C: H.78, R.79
Ligand excluded by PLIPSO4.30: 6 residues within 4Å:- Chain C: K.56, N.246, G.249, V.250, P.251, S.273
Ligand excluded by PLIPSO4.37: 3 residues within 4Å:- Chain D: I.99, Q.147, R.150
Ligand excluded by PLIPSO4.38: 2 residues within 4Å:- Chain D: Y.294, Q.295
Ligand excluded by PLIPSO4.39: 4 residues within 4Å:- Chain B: T.393
- Chain D: R.297, Y.299, R.337
Ligand excluded by PLIPSO4.40: 2 residues within 4Å:- Chain D: H.78, R.79
Ligand excluded by PLIPSO4.41: 6 residues within 4Å:- Chain D: K.56, N.246, G.249, V.250, P.251, S.273
Ligand excluded by PLIP- 4 x GOL: GLYCEROL(Non-functional Binders)
GOL.9: 3 residues within 4Å:- Chain A: S.343, R.345
- Chain C: K.328
2 PLIP interactions:1 interactions with chain C, 1 interactions with chain A- Hydrogen bonds: C:K.328, A:S.343
GOL.20: 3 residues within 4Å:- Chain B: S.343, R.345
- Chain D: K.328
2 PLIP interactions:1 interactions with chain D, 1 interactions with chain B- Hydrogen bonds: D:K.328, B:S.343
GOL.31: 3 residues within 4Å:- Chain B: K.328
- Chain C: S.343, R.345
2 PLIP interactions:1 interactions with chain C, 1 interactions with chain B- Hydrogen bonds: C:S.343, B:K.328
GOL.42: 3 residues within 4Å:- Chain A: K.328
- Chain D: S.343, R.345
2 PLIP interactions:1 interactions with chain D, 1 interactions with chain A- Hydrogen bonds: D:S.343, A:K.328
- 8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.10: 7 residues within 4Å:- Chain A: R.40, P.41, G.42, V.362, R.373, A.374, E.375
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:R.40, A:E.375, A:E.375
EDO.11: 7 residues within 4Å:- Chain A: F.34, E.35, G.262, D.263, K.266
- Chain C: R.225, I.226
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:R.225
EDO.21: 7 residues within 4Å:- Chain B: R.40, P.41, G.42, V.362, R.373, A.374, E.375
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:R.40, B:E.375, B:E.375
EDO.22: 7 residues within 4Å:- Chain B: F.34, E.35, G.262, D.263, K.266
- Chain D: R.225, I.226
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:R.225
EDO.32: 7 residues within 4Å:- Chain C: R.40, P.41, G.42, V.362, R.373, A.374, E.375
3 PLIP interactions:3 interactions with chain C- Hydrogen bonds: C:R.40, C:E.375, C:E.375
EDO.33: 7 residues within 4Å:- Chain B: R.225, I.226
- Chain C: F.34, E.35, G.262, D.263, K.266
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:R.225
EDO.43: 7 residues within 4Å:- Chain D: R.40, P.41, G.42, V.362, R.373, A.374, E.375
3 PLIP interactions:3 interactions with chain D- Hydrogen bonds: D:R.40, D:E.375, D:E.375
EDO.44: 7 residues within 4Å:- Chain A: R.225, I.226
- Chain D: F.34, E.35, G.262, D.263, K.266
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:R.225
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kim, Y. et al., Crystal Structure of the Catalytic Domain of the Inosine Monophosphate Dehydrogenase fromCampylobacter jejuni in the complex with IMP and the inhibitor P225. To Be Published
- Release Date
- 2017-03-01
- Peptides
- Inosine-5'-monophosphate dehydrogenase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
BC
BD
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.73 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x IMP: INOSINIC ACID(Non-covalent)
- 4 x 8KY: {2-chloro-5-[({2-[3-(prop-1-en-2-yl)phenyl]propan-2-yl}carbamoyl)amino]phenoxy}acetic acid(Non-covalent)
- 4 x K: POTASSIUM ION(Non-covalent)
- 20 x SO4: SULFATE ION(Non-functional Binders)
- 4 x GOL: GLYCEROL(Non-functional Binders)
- 8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kim, Y. et al., Crystal Structure of the Catalytic Domain of the Inosine Monophosphate Dehydrogenase fromCampylobacter jejuni in the complex with IMP and the inhibitor P225. To Be Published
- Release Date
- 2017-03-01
- Peptides
- Inosine-5'-monophosphate dehydrogenase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
BB
BC
BD
B