- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.73 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x IMP: INOSINIC ACID(Non-covalent)
- 4 x 8KY: {2-chloro-5-[({2-[3-(prop-1-en-2-yl)phenyl]propan-2-yl}carbamoyl)amino]phenoxy}acetic acid(Non-covalent)
8KY.2: 14 residues within 4Å:- Chain A: S.166, A.167, H.168, T.224, M.305, G.306, V.330, E.332
- Chain C: L.47, P.48, S.357, G.360, Y.361
- Ligands: IMP.1
5 PLIP interactions:3 interactions with chain A, 2 interactions with chain C- Hydrophobic interactions: A:A.167, C:P.48, C:Y.361
- Hydrogen bonds: A:E.332, A:E.332
8KY.10: 14 residues within 4Å:- Chain B: S.166, A.167, H.168, T.224, M.305, G.306, V.330, E.332
- Chain D: L.47, P.48, S.357, G.360, Y.361
- Ligands: IMP.9
5 PLIP interactions:3 interactions with chain B, 2 interactions with chain D- Hydrophobic interactions: B:A.167, D:P.48, D:Y.361
- Hydrogen bonds: B:E.332, B:E.332
8KY.18: 14 residues within 4Å:- Chain B: L.47, P.48, S.357, G.360, Y.361
- Chain C: S.166, A.167, H.168, T.224, M.305, G.306, V.330, E.332
- Ligands: IMP.17
5 PLIP interactions:2 interactions with chain B, 3 interactions with chain C- Hydrophobic interactions: B:P.48, B:Y.361, C:A.167
- Hydrogen bonds: C:E.332, C:E.332
8KY.26: 14 residues within 4Å:- Chain A: L.47, P.48, S.357, G.360, Y.361
- Chain D: S.166, A.167, H.168, T.224, M.305, G.306, V.330, E.332
- Ligands: IMP.25
5 PLIP interactions:3 interactions with chain D, 2 interactions with chain A- Hydrophobic interactions: D:A.167, A:P.48, A:Y.361
- Hydrogen bonds: D:E.332, D:E.332
- 4 x K: POTASSIUM ION(Non-covalent)
K.3: 6 residues within 4Å:- Chain A: G.217, G.219, C.222
- Chain C: E.386, S.387, H.388
5 PLIP interactions:2 interactions with chain C, 3 interactions with chain A- Metal complexes: C:E.386, C:S.387, A:G.217, A:G.219, A:C.222
K.11: 6 residues within 4Å:- Chain B: G.217, G.219, C.222
- Chain D: E.386, S.387, H.388
5 PLIP interactions:2 interactions with chain D, 3 interactions with chain B- Metal complexes: D:E.386, D:S.387, B:G.217, B:G.219, B:C.222
K.19: 6 residues within 4Å:- Chain B: E.386, S.387, H.388
- Chain C: G.217, G.219, C.222
5 PLIP interactions:2 interactions with chain B, 3 interactions with chain C- Metal complexes: B:E.386, B:S.387, C:G.217, C:G.219, C:C.222
K.27: 6 residues within 4Å:- Chain A: E.386, S.387, H.388
- Chain D: G.217, G.219, C.222
5 PLIP interactions:3 interactions with chain D, 2 interactions with chain A- Metal complexes: D:G.217, D:G.219, D:C.222, A:E.386, A:S.387
- 8 x SO4: SULFATE ION(Non-functional Binders)
SO4.4: 3 residues within 4Å:- Chain A: I.99, Q.147, R.150
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:Q.147
- Salt bridges: A:R.150
SO4.5: 3 residues within 4Å:- Chain A: Y.299, R.337
- Chain C: T.393
4 PLIP interactions:1 interactions with chain C, 3 interactions with chain A- Hydrogen bonds: C:T.393, A:Y.299
- Salt bridges: A:R.297, A:R.337
SO4.12: 3 residues within 4Å:- Chain B: I.99, Q.147, R.150
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:Q.147
- Salt bridges: B:R.150
SO4.13: 3 residues within 4Å:- Chain B: Y.299, R.337
- Chain D: T.393
4 PLIP interactions:1 interactions with chain D, 3 interactions with chain B- Hydrogen bonds: D:T.393, B:Y.299
- Salt bridges: B:R.297, B:R.337
SO4.20: 3 residues within 4Å:- Chain C: I.99, Q.147, R.150
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:Q.147
- Salt bridges: C:R.150
SO4.21: 3 residues within 4Å:- Chain B: T.393
- Chain C: Y.299, R.337
4 PLIP interactions:1 interactions with chain B, 3 interactions with chain C- Hydrogen bonds: B:T.393, C:Y.299
- Salt bridges: C:R.297, C:R.337
SO4.28: 3 residues within 4Å:- Chain D: I.99, Q.147, R.150
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:Q.147
- Salt bridges: D:R.150
SO4.29: 3 residues within 4Å:- Chain A: T.393
- Chain D: Y.299, R.337
4 PLIP interactions:3 interactions with chain D, 1 interactions with chain A- Hydrogen bonds: D:Y.299, A:T.393
- Salt bridges: D:R.297, D:R.337
- 4 x GOL: GLYCEROL(Non-functional Binders)
GOL.6: 4 residues within 4Å:- Chain A: F.292, Y.294, R.337
- Chain C: T.395
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:R.337
GOL.14: 4 residues within 4Å:- Chain B: F.292, Y.294, R.337
- Chain D: T.395
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:R.337
GOL.22: 4 residues within 4Å:- Chain B: T.395
- Chain C: F.292, Y.294, R.337
1 PLIP interactions:1 interactions with chain C- Hydrogen bonds: C:R.337
GOL.30: 4 residues within 4Å:- Chain A: T.395
- Chain D: F.292, Y.294, R.337
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:R.337
- 8 x CL: CHLORIDE ION(Non-functional Binders)
CL.7: 2 residues within 4Å:- Chain A: H.78, R.79
Ligand excluded by PLIPCL.8: 1 residues within 4Å:- Chain A: R.86
Ligand excluded by PLIPCL.15: 2 residues within 4Å:- Chain B: H.78, R.79
Ligand excluded by PLIPCL.16: 1 residues within 4Å:- Chain B: R.86
Ligand excluded by PLIPCL.23: 2 residues within 4Å:- Chain C: H.78, R.79
Ligand excluded by PLIPCL.24: 1 residues within 4Å:- Chain C: R.86
Ligand excluded by PLIPCL.31: 2 residues within 4Å:- Chain D: H.78, R.79
Ligand excluded by PLIPCL.32: 1 residues within 4Å:- Chain D: R.86
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kim, Y. et al., Crystal Structure of the Catalytic Domain of the Inosine Monophosphate Dehydrogenase fromCampylobacter jejuni in the complex with IMP and the inhibitor P225. To Be Published
- Release Date
- 2017-03-01
- Peptides
- Inosine-5'-monophosphate dehydrogenase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CB
CC
CD
C
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.73 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x IMP: INOSINIC ACID(Non-covalent)
- 4 x 8KY: {2-chloro-5-[({2-[3-(prop-1-en-2-yl)phenyl]propan-2-yl}carbamoyl)amino]phenoxy}acetic acid(Non-covalent)
- 4 x K: POTASSIUM ION(Non-covalent)
- 8 x SO4: SULFATE ION(Non-functional Binders)
- 4 x GOL: GLYCEROL(Non-functional Binders)
- 8 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kim, Y. et al., Crystal Structure of the Catalytic Domain of the Inosine Monophosphate Dehydrogenase fromCampylobacter jejuni in the complex with IMP and the inhibitor P225. To Be Published
- Release Date
- 2017-03-01
- Peptides
- Inosine-5'-monophosphate dehydrogenase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CB
CC
CD
C