SMTL ID : 4ohp.1 (1 other biounit)

Human GKRP bound to AMG-3227 and S6P

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

monomer

Ligands

1 x 2TJ: 4-[(2S)-4-[(6-aminopyridin-3-yl)sulfonyl]-2-(prop-1-yn-1-yl)piperazin-1-yl]-N-methylbenzenesulfonamide(Non-covalent)

2TJ.1: 18 residues within 4Å: Chain A: Y.36, V.40, P.41, E.44, S.46, G.193, S.195, N.221, M.225, A.226, R.227, D.229, H.516, K.526, W.529, R.530, A.533, R.537 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:V.40, A:E.44, A:R.227, A:A.533, A:A.533 Hydrogen bonds: A:E.44, A:S.46, A:N.221, A:M.225, A:R.537 Water bridges: A:R.537 Salt bridges: A:E.44

1 x S6P: D-SORBITOL-6-PHOSPHATE(Non-covalent)

S6P.2: 15 residues within 4Å: Chain A: G.119, G.120, T.121, S.122, E.162, E.165, S.191, V.192, G.193, A.196, S.269, S.270, R.271, H.363, K.526 20 PLIP interactions: 20 interactions with chain A Hydrogen bonds: A:T.121, A:T.121, A:T.121, A:S.122, A:S.122, A:E.162, A:V.192, A:G.193, A:A.196, A:S.269, A:S.270, A:R.271, A:K.526 Water bridges: A:G.119, A:E.162, A:E.165, A:E.165, A:S.191, A:K.526 Salt bridges: A:K.526

11 x IOD: IODIDE ION(Non-functional Binders)

IOD.3: 3 residues within 4Å: Chain A: Y.480, F.484, I.485 Ligand excluded by PLIP IOD.4: 1 residues within 4Å: Chain A: L.518 Ligand excluded by PLIP IOD.5: 2 residues within 4Å: Chain A: R.85, G.262 Ligand excluded by PLIP IOD.6: 3 residues within 4Å: Chain A: A.58, K.330, L.508 Ligand excluded by PLIP IOD.7: 1 residues within 4Å: Chain A: T.310 Ligand excluded by PLIP IOD.8: 2 residues within 4Å: Chain A: R.161, G.163 Ligand excluded by PLIP IOD.9: 2 residues within 4Å: Chain A: G.15, K.17 Ligand excluded by PLIP IOD.10: 3 residues within 4Å: Chain A: F.19, Q.20, K.543 Ligand excluded by PLIP IOD.11: 3 residues within 4Å: Chain A: C.205, N.208, W.234 Ligand excluded by PLIP IOD.12: 3 residues within 4Å: Chain A: Q.541, S.542, R.593 Ligand excluded by PLIP IOD.13: 3 residues within 4Å: Chain A: E.76, S.88, E.89 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nishimura, N. et al., Small molecule disruptors of the glucokinase-glucokinase regulatory protein interaction: 3. Structure-activity relationships within the aryl carbinol region of the N-arylsulfonamido-N'-arylpiperazine series. J.Med.Chem. (2014)

Release Date

2014-07-30

Peptides

Glucokinase regulatory protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Glucokinase regulatory protein

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